Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03799 ATGAATACGGAAGATACATCTCCGGCAGCGGCAATAACACGGTGGAAGTTCGAGTTATCACGGCGGTACCAACACATTCTTGACAAATCAACACCGCACGTTGGTCAGCGATGGTTAGGTTGCTTTGTGGTTGCAATGGTTTACGTTCTTCGCGTCTACATGGTGGAAGGATTCTACGTTGTTTCTTATGGTCTCGGCATTTACATCCTCAATCTTTTGATCGGATTCCTTTCGCCTCAGGTTGATCCAGAGATTCTTGATGCTGAACATGGTCCTTCGCTTCCTACCTCTGGTTCTGATGAGTTTCGTCCTTTCGTTCGTCGTCTTCCTGAGTTCAAATTCTGGTACTCAATCACAAAGGCATTTTGCATTGCATTTGTGATGACTTTCTTTAGTGCGTTTGATGTCCCCGTGTTCTGGCCAATACTCCTCTTCTACTGGGTGGTCCTATTCACGCTTACTATGAGGAGACAAATAGCTCACATGATCAAGTACAAATATGTACCATTCTCATTTGGAAAACAGCGCTATGATCGGAAGAGAACATCGGCAGAAAGCACAAGCCTTTCGGAGGACTGA 579 0.4525 MNTEDTSPAAAITRWKFELSRRYQHILDKSTPHVGQRWLGCFVVAMVYVLRVYMVEGFYVVSYGLGIYILNLLIGFLSPQVDPEILDAEHGPSLPTSGSDEFRPFVRRLPEFKFWYSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIAHMIKYKYVPFSFGKQRYDRKRTSAESTSLSED 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03799 192 PIRSF AtER_Rer1p 1 188 IPR004932 GO:0016020
Trre15g03799 192 Pfam Rer1 family 16 177 IPR004932 GO:0016020
Trre15g03799 192 PANTHER PROTEIN RER1 4 183 IPR004932 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03799 Trre-Chr15 47343767 47345917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03799 2 185 Miscellaneous Gene Families AT4G39220 67.391 1.28e-93 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03799 - - ahf:112799570 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03799 15 47343767 47345917 Trre15g03799 15 47343767 47345917 ECH
Trre9g00799 9 6120061 6122006 Trre15g03799 15 47343767 47345917 PCT