Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03159 ATGGAGTGGTCATCATGTACGGATGAGTACGAGAAGCTTGTTTTTCGCATGAGCACTCCCAGGGTCGTCATTGACAATGCGGTTTGTTCCAATTCAACCATAGTCAAGTTTGATAGTGCCAGAAAGCATGGGATTCTTTTGGAAGCTGTACAAATTCTCAGTGATTTAAACCTTTTCATTAAGAAAGCATATGTTTCGTCCGATGGCAGATGGTTCATGGATGTTTTTCATGTTACGGATCAAAATGGAAACAAGTTAACAGATGAGAGCGTTTTAAAGTATATTGAACAGTCACTTAGTAGCATTCACAATGGAAAAACCAATCATAGAAATGGTCTCACTGCCTTGGAATTGAAGGGCACGGACCGTGTTGGTCTTCTTTCTGAGGTGTTTGCTGTATTGACTGAGTTACAATGTGATGTGGTGGAGGCTAAAGTTTGGACTCACAATGGCCGAATTGCATCCTTAATTTATGTTAAAGACTGCAACACTGGGACCTCTGTTGAAGATTATCAGAAAATCAATAGGCTCGAAGCGCGCCTAAGATATGTTCTACAGGGAGATAGTGATGTTAGGAGTGCGACAACATCTCTCTCTGATGTTGTTACACATCCTGAAAGAAGGCTCCATCAGATGATGTTTGCAGACCGTGACTATCAGAAGAATCCTATTTTCGAGTTTACTTCCGAAACACCGTTGGTGACTGTCCAAAATTGGGCAGAAAGGGGTTATTCGGTTGTTAATGTTCAATGCAAGGATAGAGTTAAGTTATTGTTTGATGTTGTGTGCAATTTGACAGACATGGAATATGTTGTGTTCCATGCAACTATCAACACAAGGATTGACCAAGCATATCTGGAATTTTACATAAGACATAAAGATGGCACCCCAATTAGTTCAGAACCGGAGCGTCAACGTGTGATTCAATGCTTGCAAGCAGCAGTGGAGAGAAGATCATGCGAGGGTGTTAGGCTAGAGTTATCCACAGAAGACAGGCAAGGTCTTCTAGCTGAGGTTATGAGAACATTCCGAGAAAACGGGTTAAATGTGACTAGGGCTGACATAGCCACCACAGGCGACTTGGCTGCAAATACTTTCTATGTAACAGATGCCATTGGATACACAGCGGACCAAAAAATCATCGAATCTGTTCGACAAAAAATCGGGTTAACCAATTTAAAAGTGAAGGAGTTGCCTTTTGTAAGTCGCGAGAAGGCAGAGAGGGAAGACCAATCAGTTGGAGTTGGCGGGGCAGTGTTATTATCTCTTGGTAGCCTTGTGAGAAGGAATCTATACAATTTAGGTTTGATCAAATCTTGTTCTTAA 1326 0.417 MEWSSCTDEYEKLVFRMSTPRVVIDNAVCSNSTIVKFDSARKHGILLEAVQILSDLNLFIKKAYVSSDGRWFMDVFHVTDQNGNKLTDESVLKYIEQSLSSIHNGKTNHRNGLTALELKGTDRVGLLSEVFAVLTELQCDVVEAKVWTHNGRIASLIYVKDCNTGTSVEDYQKINRLEARLRYVLQGDSDVRSATTSLSDVVTHPERRLHQMMFADRDYQKNPIFEFTSETPLVTVQNWAERGYSVVNVQCKDRVKLLFDVVCNLTDMEYVVFHATINTRIDQAYLEFYIRHKDGTPISSEPERQRVIQCLQAAVERRSCEGVRLELSTEDRQGLLAEVMRTFRENGLNVTRADIATTGDLAANTFYVTDAIGYTADQKIIESVRQKIGLTNLKVKELPFVSREKAEREDQSVGVGGAVLLSLGSLVRRNLYNLGLIKSCS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03159 441 Pfam ACT domain 324 382 IPR002912 -
Trre15g03159 441 CDD ACT_ACR_3 244 318 - -
Trre15g03159 441 SUPERFAMILY ACT-like 29 97 IPR045865 -
Trre15g03159 441 ProSiteProfiles ACT domain profile. 324 403 IPR002912 -
Trre15g03159 441 SUPERFAMILY ACT-like 111 184 IPR045865 -
Trre15g03159 441 SUPERFAMILY ACT-like 321 393 IPR045865 -
Trre15g03159 441 ProSiteProfiles ACT domain profile. 115 196 IPR002912 -
Trre15g03159 441 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 397 IPR040217 -
Trre15g03159 441 CDD ACT_ACR_1 33 103 - -
Trre15g03159 441 Gene3D - 113 192 - -
Trre15g03159 441 Gene3D - 322 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03159 Trre-Chr15 29327774 29331586 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03159 - - gmx:100794729 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00469 13 3708420 3711366 Trre15g03159 15 29327774 29331586 ECH
Trre15g03159 15 29327774 29331586 Trre15g03159 15 29327774 29331586 ECH