Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00469 ATGGACTTTTGGACTTCTTCTCTTCCTCTTGATGATGAATTTGAAAAGCTTGTAATTCGAATGAATCCTCCAAGAGTTACTGTTGATAATACTTCAAGCAGAACAACCACTTTGATAAAGGTTGATAGTGCAAATAAACGTGGTAGTTTGTTGGAAGTTGTTCAAGTTCTTACTGATATGAATCTCATTGTTAGAAGAGCTTATATTTCATCTGATGGTGGATGGTTCATGGATGTTTTTCATGTGACTGATCAAAATGGGAAAAAGTGTCTTCAAGAAGATGTTGCTGACAGAATTCAACAGTCACTGGGTCCAAGAGTCCGAAGTTTCCGATCCGTGAGAAGGTCGGTCGGAGTTCAAGCTGCAGCAGAACATACAACAATCGAGTTAACAGGACGCGATAGACCAGGACTGCTTTCAGAAGTTTTTGCTATTCTTGCTGACCTCAAATGCAACGTGGTAGCGGCTGAAGTCTGGACACACAATTCAAGAATGGCGTCAGTCGTTTACATCACCGATGATGAAACAGGATTGCCGATCGACAATACAGACCGTCTCGCTAAGATTAAGCATCTTTTGCTTTATGTGCTGAGAGGAGACATTGACAAGAAAAATGCCAACACTGCTGTTTCATTTTGTTCGACTCATAAGGAAAGGAGGCTGCATCAGTTGATGTATGCTGATCGCGATTATGACATTTCTGATGGAGATTATTCTTGCTCAACAACTGACAGAAACAAGCTCAACGTAACTGTTGATGATTGTACCGATAAGGGATATACTGTTGTGAACTTGAGGTGTCCGGATCGACCGAAGTTACTATTCGATACTGTTTGCACACTCACTGACATGCAGTATGTTGTGTACCATGGAACTGTCATTGCTGAAGGACCAGAAGCTTATCAGGAATATTACATTCGGCATGTCGATGGATATCCTATCAGTTCTGAAGCCGAAAGGCAAAGAGTGATTCATTGCTTGGAGGCTGCTGTTCGGAGGCGAACTTCTGAGGGAATAAAGCTTGAACTTAGTGGTGAAGACAGATTTGGCCTTTTGTCCGATGTAACTCGCATCTTTAGAGAAAACGGCCTTTCAGTCTGCCGCGCTGAGGTCACAACAAGAGGTTCCCAAGCCATGAATGTTTTCTATGTGACTGATGTGTCTGGAAATCCGGTTAAGAGTGAAACAATTGAGGCTGTTCGAAAAGAGATCGGGTTGACTATACTGCGTGTGAAAGACGAACCATGCTCGAAATCACCGTCCCGGGAGAGTGGAAAATTTTCTTTACGTGATCTCGTTCGTTCGAGGTCCGAGAGGTTTCTTTACAATTTAGGTTTGATGAAGTCTTCTTCTTGA 1356 0.4255 MDFWTSSLPLDDEFEKLVIRMNPPRVTVDNTSSRTTTLIKVDSANKRGSLLEVVQVLTDMNLIVRRAYISSDGGWFMDVFHVTDQNGKKCLQEDVADRIQQSLGPRVRSFRSVRRSVGVQAAAEHTTIELTGRDRPGLLSEVFAILADLKCNVVAAEVWTHNSRMASVVYITDDETGLPIDNTDRLAKIKHLLLYVLRGDIDKKNANTAVSFCSTHKERRLHQLMYADRDYDISDGDYSCSTTDRNKLNVTVDDCTDKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHGTVIAEGPEAYQEYYIRHVDGYPISSEAERQRVIHCLEAAVRRRTSEGIKLELSGEDRFGLLSDVTRIFRENGLSVCRAEVTTRGSQAMNVFYVTDVSGNPVKSETIEAVRKEIGLTILRVKDEPCSKSPSRESGKFSLRDLVRSRSERFLYNLGLMKSSS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00469 451 Pfam ACT domain 126 175 IPR002912 -
Trre13g00469 451 Pfam ACT domain 341 399 IPR002912 -
Trre13g00469 451 ProSiteProfiles ACT domain profile. 127 204 IPR002912 -
Trre13g00469 451 ProSiteProfiles ACT domain profile. 340 416 IPR002912 -
Trre13g00469 451 CDD ACT_ACR_3 260 334 - -
Trre13g00469 451 CDD ACT_ACR_2 126 199 - -
Trre13g00469 451 SUPERFAMILY ACT-like 34 103 IPR045865 -
Trre13g00469 451 SUPERFAMILY ACT-like 124 179 IPR045865 -
Trre13g00469 451 ProSiteProfiles ACT domain profile. 38 115 IPR002912 -
Trre13g00469 451 SUPERFAMILY ACT-like 336 405 IPR045865 -
Trre13g00469 451 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 8 412 IPR040217 -
Trre13g00469 451 Gene3D - 125 196 - -
Trre13g00469 451 Gene3D - 338 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00469 Trre-Chr13 3708420 3711366 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00469 - - gmx:100798999 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00469 13 3708420 3711366 Trre13g00469 13 3708420 3711366 ECH
Trre13g00469 13 3708420 3711366 Trre15g03159 15 29327774 29331586 ECH