Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02098 ATGGCAGGAGGTGGAGCTGCACCACAACCAAAGCAAGATGAACTTCTTCCACATCCAGTTAAAGATCAATTACCAAATGTTTCTTATTGCATTACAAGTCCTCCTCCATGGCCCGAGGCAATCCTACTTGGTTTTCAACATTACCTTGTGATGCTTGGTACAACTGTTCTAATTCCAAGTTCTCTAGTTCCTCAGATGGGAGGAGGAAATGAAGAGAAAGCAAAAGTGATTCAGACTTTACTATTTGTGGCTGGAATTAACACATTTTTTCAAACAACATTCGGGACTCGTCTACCTGCTATTATCGGAGGATCCTACACTTTTGTGCCAACAACCATTTCAATCATTTTGGCCGGTCGTTATAGTGACATTGTGAATCCTCATGAGAAATTCGAGAAGATAATGAGGGGAACACAAGGTGCACTTATAGTTGCTTCAACGCTTCAAATTGTTCTCGGTTTTAGTGGCCTTTGGCGCAATGTAGTAAGGTTATTAAGTCCTCTCTCGGCCGTTCCCTTGGTTGCTCTCTCAGGCTTTGGAATGTATGAATTTGGATTTCCAGTGCTTGCAAAATGTGTGGAGATTGGATTACCAGAAATCATAATCCTAGTAGTATTTTCACAGTACATTCCTCACATGATGAAAGGAGATAAGCCACTCTTCGATCGGTTTGCAGTTTTATTCTCAGTAGCAATTGTGTGGCTTTATGCTTATCTTCTAACTGTTGGTGGAGCTTATAAAAATTCAGCACCAAAAACTCAAATTACATGTAGGACAGATCGTGCCGGAATCATAGGTGGTGCTTCTTGGATAAGTGTTCCATATCCCTTTCAATGGGGAGCTCCAACATTTGATGCCGGTGAAACTTTTGCTATGATGGCTGCTTCACTTGTTGCATTAGTAGAGTCAACAGGTGCTTTTATTGCCGTGTCAAGGTATGCAAGTGCAACACCAATTCCACCTTCAGTTCTTAGCAGAGGTGTAGGTTGGCAGGGAGTTGGAATAATGTTATCTGGGATATTTGGGACAGGGAATGGATCATCAGTTTCTGTGGAGAATGCAGGATTGTTAGCTTTGACACGTGTTGGTAGCCGAAGGGTCGTTCAAATATCAGCTGGATTCATGATTTTTTTCTCAATTCTAGGAAAATTCGGAGCAGTTTTTGCTTCTATTCCAGCACCAATAATTGCAGCTTTATATTGCCTTTTCTTTGCCTATGTGGGCTCAGCAGGTCTTAGCTTCCTTCAATTTTGCAATTTAAACAGCTTTAGAACAAAATTCATCTTAGGCTTCTCTATTTTCATGGGATTCTCAATACCACAATATTTCAATGAGTACACAGCATTTAAAGGCTATGGTCCGGTACACACACGCGCAAGATGGTTCAATGACATGATCAATGTCCCATTTGCATCTGAAGCATTTGTTGGTAGTTTATTGGCAATGTTTTTGGATGTAACATTGCACAAAAAAGACAATCAAACACGTAAAGATAGAGGAATGCATTGGTGGGACAAGTTTCGTTCATTCAAAACAGATACAAGAAGTGAAGAATTTTATTCACTTCCTTTTAATCTAAACAAGTTTTTCCCTTCTGTGTAA 1602 0.402 MAGGGAAPQPKQDELLPHPVKDQLPNVSYCITSPPPWPEAILLGFQHYLVMLGTTVLIPSSLVPQMGGGNEEKAKVIQTLLFVAGINTFFQTTFGTRLPAIIGGSYTFVPTTISIILAGRYSDIVNPHEKFEKIMRGTQGALIVASTLQIVLGFSGLWRNVVRLLSPLSAVPLVALSGFGMYEFGFPVLAKCVEIGLPEIIILVVFSQYIPHMMKGDKPLFDRFAVLFSVAIVWLYAYLLTVGGAYKNSAPKTQITCRTDRAGIIGGASWISVPYPFQWGAPTFDAGETFAMMAASLVALVESTGAFIAVSRYASATPIPPSVLSRGVGWQGVGIMLSGIFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIIAALYCLFFAYVGSAGLSFLQFCNLNSFRTKFILGFSIFMGFSIPQYFNEYTAFKGYGPVHTRARWFNDMINVPFASEAFVGSLLAMFLDVTLHKKDNQTRKDRGMHWWDKFRSFKTDTRSEEFYSLPFNLNKFFPSV 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02098 533 Pfam Permease family 39 443 IPR006043 GO:0016020|GO:0022857|GO:0055085
Trre15g02098 533 NCBIfam purine/pyrimidine permease 41 439 - -
Trre15g02098 533 PANTHER XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER 8 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02098 Trre-Chr15 17079487 17083359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02098 7 533 Organic Solute Cotransporters AT1G60030 79.317 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02098 - - gmx:100776272 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02098 15 17079487 17083359 Trre15g02098 15 17079487 17083359 ECH
Trre9g02254 9 25152004 25156572 Trre15g02098 15 17079487 17083359 PCT