Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01335 ATGGCTGGATGGGCTCGTATGATGAAGTATAGAAGTTCCAAGAGAATTGCAAAGGCTGTTGACATCAAACTCCTTGGATCCCTCAACAGAGATGATTTAAAGAAACTTTGTGGTGAAAATCTTCCTGAGTGGATATCTTTTCCTGTATACGAGCAGGTGAAATGGCTAAACAAGCTCCTGAGCAAACTTTGGCCATTTGTAGCAGAAGCCGCAACACTGGTGATCAGGGAATCAGTTGAACCTCTACTGGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGCAAACTGTCATTAGGAAATGTAGCTCCAAAAATTGAAGGTATTCGTGTGCAGAGTCTCACCAAAGGTCAAATCATAATGGACATAGATTTCCGATGGGGTGGTGATCCCAGTATTATTTTGGCCGTTGAAGCTGCACTTGTTGCGTCAATCCCTATTCAGTTGAAGGATCTAAAAGTTTTTACTGTCATCCGGGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTTGCTCTACTTGCCGAGCCGAAGCCGAGGATTGATTATACTTTGAAAGCTGTTGGTGGAAGTTTAACTGCTCTTCCTGGAATTTCAGATATGATTGACGATACTGTGAACACAATTGTTACTGATATGCTCCAATGGCCACATAGGATTGTTGTTCCGCTTGGTGGAATACCTGTTGATATTAGTGAACTGGAGCTTAAACCTCAAGGAAGTCTTAAAGTGACTGTAGTGAAAGCAACTGGTTTAAAGAATATGGAAATGATCGGAAAATCAGATCCTTATGTAGTTTTGTCCATTCGACCCTTATTCAAGGTTAAAACCAAGGTCGTTAATAACAACTTGAATCCTGTTTGGGATCAAACATTTGAGTTGATTGCAGAAGACAAGGAGACTCAGTCACTCACTATTGAGGTTTTTGATGAAGACATTGGGCAAGATAAGAGACTGGGAATTGTAAAATTACCCCTTATTGACCTGGAAGTACAAAATGAAAAGGAGCTTCAATTGAATCTCCTGTCATCACTTGATACACTCAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACTATAAAGGTCTTCTATTACCAGTTTAACAAGGAAGAACAATTGGCTGCACTAGAAGCAGAAAAAGCTATATTAGAAGAAAGGAAGAAACTAAAAGCAGCAGGCGTCATAGGTAGCACAATGGATGCACTCGACGGAGCAGCTGGATTAGTAGGGTCTGGTGTTGGACTAGTTGGAAGTGGTCTTGTTGGCGGAGCCGGGCTTGTCGGAAGTGGTATTGGCGCTGGAGCAGGGATTGTTACCAGTGGTTTTGGAGCCTTCGGTAGCGGAATTTCTAAAGCAGGAAAGTTTATGGGAAGGACCATAACAGGAGGTCATAGTGGCTCAAGAAGGAGTGGTTCATCTACTCCAGTTCATAATCCACAGGAAAATGGTAGTGGTGGTGCTGCAAAGCCTCAATAA 1500 0.422 MAGWARMMKYRSSKRIAKAVDIKLLGSLNRDDLKKLCGENLPEWISFPVYEQVKWLNKLLSKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLKVFTVIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNTIVTDMLQWPHRIVVPLGGIPVDISELELKPQGSLKVTVVKATGLKNMEMIGKSDPYVVLSIRPLFKVKTKVVNNNLNPVWDQTFELIAEDKETQSLTIEVFDEDIGQDKRLGIVKLPLIDLEVQNEKELQLNLLSSLDTLKVKDKKDRGTLTIKVFYYQFNKEEQLAALEAEKAILEERKKLKAAGVIGSTMDALDGAAGLVGSGVGLVGSGLVGGAGLVGSGIGAGAGIVTSGFGAFGSGISKAGKFMGRTITGGHSGSRRSGSSTPVHNPQENGSGGAAKPQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01335 499 CDD C2 249 345 - -
Trre15g01335 499 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 245 375 IPR035892 -
Trre15g01335 499 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 409 IPR045050 GO:0008289
Trre15g01335 499 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 49 232 IPR031468 GO:0008289
Trre15g01335 499 MobiDBLite consensus disorder prediction 465 499 - -
Trre15g01335 499 Coils Coil 374 394 - -
Trre15g01335 499 Gene3D C2 domain 242 399 IPR035892 -
Trre15g01335 499 CDD SMP_SYT 42 231 - -
Trre15g01335 499 PRINTS C2 domain signature 264 276 IPR000008 -
Trre15g01335 499 PRINTS C2 domain signature 289 302 IPR000008 -
Trre15g01335 499 PRINTS C2 domain signature 311 319 IPR000008 -
Trre15g01335 499 SMART C2_3c 248 345 IPR000008 -
Trre15g01335 499 FunFam synaptotagmin-4 isoform X1 242 400 - -
Trre15g01335 499 Pfam C2 domain 247 345 IPR000008 -
Trre15g01335 499 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 51 231 IPR039010 -
Trre15g01335 499 ProSiteProfiles C2 domain profile. 230 346 IPR000008 -
Trre15g01335 499 MobiDBLite consensus disorder prediction 471 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01335 Trre-Chr15 10330743 10337394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01335 249 337 Lipid Metabolism Gene Families AT4G00700 39.326 4.67e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01335 - - tpra:123895719 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01335 15 10330743 10337394 Trre15g01335 15 10330743 10337394 ECH
Trre13g01975 13 17001741 17007230 Trre15g01335 15 10330743 10337394 PCT