Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01975 ATGGCTGGATTAGAGCGAATGATGAGATACAGAAGCGCCAAGCGAATTGCAAAGGCAGTTGACATTAAACTCCTTGGATCCCTTAATAGAGATGAATTAAAGAAAATTTGTGGTGAAAATTTACCTGAATGGATATCGTTCCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCTGCTGTCCAAATTGTGGCCATTTGTGGCAGATGCAGCAACTATGGTGATAAGAGAATCTGTTGAACCTCTACTAGAAGAGTATAGACCTCCTGGAATTTCTTCATTGAAGTTCAGTAAGCTGTCCCTTGGAAATGTCGCTCCAAAAATTGAAGGTATTCGTGTTCAGAATCTTAAGAAAGGTCAAATAATAATGGACATTGATTTCCGCTGGGGCGGTGATCCCAATATTGTTTTGGCTGTTGAAGCCCTTGTTGCGTCAATTCCTATTCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGACGAGATCCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTCTGAAGGCAGTTGGTGGAAGTTTGACTGCACTTCCTGGAGTTTCAGATATGATTGATGATACTGTGACCTCAATTGTTACCGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCACTTGGTGGTATTCCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAAGGCTTAACGTGACTGTAATAAAAGCAAATGATCTAAAGAATATGGAAATGATTGGGAAGTCTGACCCTTATGTAGTTTTGCATATTCGACCATTGTTTAAAGTTAAAACAAAGGTTATTGATAACAACTTGAATCCAATTTGGAATGAGGAATTTGACTTGATTGCAGAAGACAAGGAGACCCAGTCACTCATTCTCGAGGTTTTTGATGAAGACATTGGGCAAGATAAACGACTGGGAATAGCAAAATTGCCACTTATTGACTTGGAAGCAGAAACTGAGAAGGAAATGGAAGTGAGGCTTCTGTCATCGCTTGATACACTGAAAGTGAAAGATAAAAAGGATCGAGGAACCTTGAGAATAAAGCTATTCTATCATGAATTTAACAAGGAAGAGCAGAAAGCTGCACTAGAAGCAGAGAAAATGATACTAGAGCAAAGGAAGAAACTGAAAGAGGAAGGAGTTATAGGAAGTACAATGGACGCGCTAGACGGAGCAACAACAGTAGTTAGTTCTGGTGTTGGACTGGTTGGTTCTGGTGTTACTGCTGGTGCTGGACTTGTAGGAAGTGGAATTGGTGCTGGAGCTGGACTTGTAGGAAGTGGAGTTGGCGCTGGAGCTGGACTTGTTGGCAGTGGATTCGGCGCTGTTGGCAGTGGGCTTGGTGCCGTTGGCAGTGGATTGAGCAGAGCAGGAAAGTTCATGGGCAGGACAATCACAGGGCATTCTGGTGCCAGCAGAAGGAGTGCCAGCGGTTCAACTACTCCTGTCAGTAATTTTGAGGAAAGTGGTGGTGGTGCAAAGCCGCGGTAA 1551 0.432 MAGLERMMRYRSAKRIAKAVDIKLLGSLNRDELKKICGENLPEWISFPVYEQVKWLNKLLSKLWPFVADAATMVIRESVEPLLEEYRPPGISSLKFSKLSLGNVAPKIEGIRVQNLKKGQIIMDIDFRWGGDPNIVLAVEALVASIPIQLKDLQVFTIIRVIFQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGVSDMIDDTVTSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGRLNVTVIKANDLKNMEMIGKSDPYVVLHIRPLFKVKTKVIDNNLNPIWNEEFDLIAEDKETQSLILEVFDEDIGQDKRLGIAKLPLIDLEAETEKEMEVRLLSSLDTLKVKDKKDRGTLRIKLFYHEFNKEEQKAALEAEKMILEQRKKLKEEGVIGSTMDALDGATTVVSSGVGLVGSGVTAGAGLVGSGIGAGAGLVGSGVGAGAGLVGSGFGAVGSGLGAVGSGLSRAGKFMGRTITGHSGASRRSASGSTTPVSNFEESGGGAKPR 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01975 516 MobiDBLite consensus disorder prediction 488 507 - -
Trre13g01975 516 Pfam C2 domain 246 342 IPR000008 -
Trre13g01975 516 PRINTS C2 domain signature 288 301 IPR000008 -
Trre13g01975 516 PRINTS C2 domain signature 310 318 IPR000008 -
Trre13g01975 516 PRINTS C2 domain signature 263 275 IPR000008 -
Trre13g01975 516 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 51 230 IPR039010 -
Trre13g01975 516 Coils Coil 373 400 - -
Trre13g01975 516 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 246 373 IPR035892 -
Trre13g01975 516 SMART C2_3c 247 344 IPR000008 -
Trre13g01975 516 FunFam synaptotagmin-4 isoform X1 241 399 - -
Trre13g01975 516 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 398 IPR045050 GO:0008289
Trre13g01975 516 Gene3D C2 domain 241 400 IPR035892 -
Trre13g01975 516 CDD SMP_SYT 42 230 - -
Trre13g01975 516 CDD C2 248 348 - -
Trre13g01975 516 MobiDBLite consensus disorder prediction 485 516 - -
Trre13g01975 516 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 49 231 IPR031468 GO:0008289
Trre13g01975 516 ProSiteProfiles C2 domain profile. 229 345 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01975 Trre-Chr13 17001741 17007230 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01975 231 332 Lipid Metabolism Gene Families AT3G61300 30.097 4.23e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01975 - - gmx:100785209 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01975 13 17001741 17007230 Trre15g01335 15 10330743 10337394 PCT