Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01179 ATGAACCTCAAGGAAGAAGAAGTATTAGAGTTTCTTGGATGCGTTCCGCTACTACAGAGATTACCTAGCTCGTCTATAAGGAAGATTTCAGAACTTGTGGTTGTTAAACACTATGAGCGAGGGGAGTATGTTGCTCGTGAGGATGAACCAGGAGATGGAACTTACTTCATATGGGATGGGGAGGCCGAGGTTGTTGGATCTGTTAGTGCCAATGATGAAAATCGTCCAGAGTTCCAGTTGAATAAATATGACTACTTTGGTTGTGGTTTGTCAAATACAGTCCACAATGCAGATGTTGTTGCTTTGTCTAAGCTAACATGCTTAGTACTGCCCCGTGAGCACTTGGCACTGCTATGGCCAAAGTCTATATGGAGCGCAGAAAAACGTCCTGAGAGATGCTCAGCTATGGAGAATATATTGCAATTAGAACCTTTGGAGGTAGATACCTTTCAAGGAATCACTCCTCCAGGTGCTCCAAATTTTGGAAAGGTGTTTGGTGGACAGCTGGTTGGACAGGCACTAGTTGCAGCATCAAAATCTGTTGACTGTCTTAAGTTACTTCATAGTATGCATGCCTATTTTCTTCGTATAGGAGACTTAAACATGCCTATTATATATCAAGTCCATCGGCTCCGCGACGGGAAGAACTTTGCTACACGGAAAGTGGATGCAATGCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCAGAGAGAAGAATCAGCATTTGACCACCAGGAAGTAGCCATGCCATCTGTCGCTGCACCAGAAATGCTTCTGCCATTAGAAGAGCTACGGGAGAGACGTCTAATCGACCCTCGCCTGCCAATAATTTACCGGAATAAAGTGGCTACAACTGAGTTCGTTCCCTGGCCCATAGAGATACGGTTCTGTGAACCTAGAATTGCAACAAATATGACAAAATCTCCTCCCAGTTTGAGATACTGGTTTCGTACAAAGGGAAAACTTTCAGATGATCAGGCCTTGCATAGGTGTGTTGTAGCATATGCTTCAGATCTAATATTTCTTCAAGTAAGTTTGAATCCACATCGTGGGAAAGGTTTCAGGGCACGTGGTGTTAGTCTGGATCATGCAATGTGGTTTCACCGACCCTTAAAAGCTGATGAGTGGGTACTATTTGAGATCTTCACTCCCAGTGCCTATGAAGCACGCGGTTTTGTCATAGGTCAAATGTTCAATCAGAAGGGAAAGCTTCTTGTAACATTAATTCAAGAAGGTCTAACCAGGAATGCTAGTTCCGAAATTTCGGACAAAATATCTAAGTTGTGA 1296 0.4321 MNLKEEEVLEFLGCVPLLQRLPSSSIRKISELVVVKHYERGEYVAREDEPGDGTYFIWDGEAEVVGSVSANDENRPEFQLNKYDYFGCGLSNTVHNADVVALSKLTCLVLPREHLALLWPKSIWSAEKRPERCSAMENILQLEPLEVDTFQGITPPGAPNFGKVFGGQLVGQALVAASKSVDCLKLLHSMHAYFLRIGDLNMPIIYQVHRLRDGKNFATRKVDAMQKGNVIFTLLASFQREESAFDHQEVAMPSVAAPEMLLPLEELRERRLIDPRLPIIYRNKVATTEFVPWPIEIRFCEPRIATNMTKSPPSLRYWFRTKGKLSDDQALHRCVVAYASDLIFLQVSLNPHRGKGFRARGVSLDHAMWFHRPLKADEWVLFEIFTPSAYEARGFVIGQMFNQKGKLLVTLIQEGLTRNASSEISDKISKL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01179 431 CDD Thioesterase_II_repeat2 148 240 - -
Trre15g01179 431 FunFam Acyl-CoA thioesterase II 3 126 - -
Trre15g01179 431 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 135 243 IPR029069 -
Trre15g01179 431 Gene3D Jelly Rolls 2 126 IPR014710 -
Trre15g01179 431 SMART cnmp_10 17 137 IPR000595 -
Trre15g01179 431 PANTHER ACYL-COA THIOESTERASE 109 420 IPR003703 GO:0006637|GO:0047617
Trre15g01179 431 SUPERFAMILY cAMP-binding domain-like 7 119 IPR018490 -
Trre15g01179 431 FunFam Acyl-CoA thioesterase II 131 421 - -
Trre15g01179 431 CDD Thioesterase_II_repeat1 315 416 - -
Trre15g01179 431 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 250 419 IPR029069 -
Trre15g01179 431 CDD CAP_ED 17 115 IPR000595 -
Trre15g01179 431 Gene3D - 131 421 IPR042171 -
Trre15g01179 431 Pfam Cyclic nucleotide-binding domain 36 116 IPR000595 -
Trre15g01179 431 ProSiteProfiles cAMP/cGMP binding motif profile. 17 87 IPR000595 -
Trre15g01179 431 Pfam Thioesterase-like superfamily 159 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01179 Trre-Chr15 9188731 9198022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01179 3 431 Acyl Lipid Metabolism Gene Families AT1G01710 64.336 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01179 K01068 - gmx:100803260 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01179 15 9188731 9198022 Trre15g01179 15 9188731 9198022 ECH
Trre13g02548 13 23319204 23325625 Trre15g01179 15 9188731 9198022 PCT