Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02548 ATGGCGAAGGAAGAAGTGTTCGAGTTTCTCGGTTGTGTTCCTCTGCTTCAGAGGCTTCCTAGATCATCTTTACGGAACATTTCTCAACTTGTCATTCTCAAAAACTATGAGCCGGGAGAGTATGTTGTTCGTGAGGGAGAGCCTGGAGAGGGTCTTTACTTTGTTTGGGAAGGAGAGGCTGAGGTTATTGGATCTGGTCTTGCTGATGATCAAAAGGATCTAGAGTTTCAACTGAAAAGATATGACTATTTTGGTTTATCAAATGCAGTTCACCATGCTGATGTCGTAGCTTTGACTAAGCTATCCTGTCTAGTGCTGCCCCATGAGCACTCGGCACTGTTGCAGCCAAAGTCTATCTGGAGTGCAGAAAAATCTCTTGAGACATGCTCACCTGTAGAGCATATATTGCATTTAGAGCCAATAGAGGTAGATATTTTTCAAGGAATAACCCCACCAGATGCTCCAAAATTTGGGAAGGTGTTTGGGGGACAGCTAATTGGACAGGCATTGGCTGCAGCATCAAAGTCTGTTGATTGTCTAAAAGTTGTTCATAGCTTGCATGTGTATTTTCTTCTTGTCGGGGATTTTAACATACCAATTCTATATAAAGTTAAGCGTCTGCGCGAAGGGAAGAGCTTTGCTACGAGGAAAGTGGATGCAATTCAAAAGGGAAACATAATATTCACTTTGCTGGCTTCATTTCAGAAAGATGAATTAGGATTTCAACACCAGGAAGTGTCTATGCCATCTGTCCCTTCCCCAGACCAGCTTGTATCTTTGGAAGAGTTACATGAGCAACGTCTTACTGACCCTCGTCTTCCAAGAACTTACCGGGCCAAAGTTGCTACAGCTGAGTTCATTCCCTGGCCCATAGAGATACGATTCTGTGAACCTAGACCAACAACAAATCAGACCAAGTCTCCTCCTAGTTTGAGATACTGGTTTAGAGCAAAAGGAAAATTGTCAGATGATCAGGCCTTGCATAGGTGTGTGGCAGCATTTGCTTCTGATCTAATATTTCTTCAAGTAAGTGTGAATCCCCACCGTCGGGTGGGTTTAAAGACACGTGCTGTAAGTTTGGACCACTCCATGTGGTTTCACAGACCTTTAAGAGCTGATGACTGGGTGCTATATGAGATATTTAGTCCAACTGCCTTCAATGCGCGTGGCTATGTTACAGGCCGAATGTTCAATCAAAAGGGAGAGCTTCTTGTTTCATTGGTTCAAGAAGGCCTGGCAAGGAAGGAAATTCCCAAAAGATCAGCCACCAACTCTAAGTTGTGA 1284 0.4369 MAKEEVFEFLGCVPLLQRLPRSSLRNISQLVILKNYEPGEYVVREGEPGEGLYFVWEGEAEVIGSGLADDQKDLEFQLKRYDYFGLSNAVHHADVVALTKLSCLVLPHEHSALLQPKSIWSAEKSLETCSPVEHILHLEPIEVDIFQGITPPDAPKFGKVFGGQLIGQALAAASKSVDCLKVVHSLHVYFLLVGDFNIPILYKVKRLREGKSFATRKVDAIQKGNIIFTLLASFQKDELGFQHQEVSMPSVPSPDQLVSLEELHEQRLTDPRLPRTYRAKVATAEFIPWPIEIRFCEPRPTTNQTKSPPSLRYWFRAKGKLSDDQALHRCVAAFASDLIFLQVSVNPHRRVGLKTRAVSLDHSMWFHRPLRADDWVLYEIFSPTAFNARGYVTGRMFNQKGELLVSLVQEGLARKEIPKRSATNSKL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02548 427 CDD Thioesterase_II_repeat2 144 236 - -
Trre13g02548 427 CDD CAP_ED 15 110 IPR000595 -
Trre13g02548 427 Gene3D Jelly Rolls 1 127 IPR014710 -
Trre13g02548 427 Pfam Cyclic nucleotide-binding domain 34 109 IPR000595 -
Trre13g02548 427 PANTHER ACYL-COA THIOESTERASE 117 415 IPR003703 GO:0006637|GO:0047617
Trre13g02548 427 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 246 414 IPR029069 -
Trre13g02548 427 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 42 58 IPR018488 -
Trre13g02548 427 FunFam Acyl-CoA thioesterase II 127 417 - -
Trre13g02548 427 CDD Thioesterase_II_repeat1 311 412 - -
Trre13g02548 427 Pfam Thioesterase-like superfamily 158 412 - -
Trre13g02548 427 ProSiteProfiles cAMP/cGMP binding motif profile. 15 85 IPR000595 -
Trre13g02548 427 SMART cnmp_10 15 130 IPR000595 -
Trre13g02548 427 FunFam Acyl-CoA thioesterase II 1 122 - -
Trre13g02548 427 SUPERFAMILY cAMP-binding domain-like 4 110 IPR018490 -
Trre13g02548 427 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 128 238 IPR029069 -
Trre13g02548 427 Gene3D - 128 416 IPR042171 -
Trre13g02548 427 NCBIfam acyl-CoA thioesterase II 136 414 IPR003703 GO:0006637|GO:0047617
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02548 Trre-Chr13 23319204 23325625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02548 1 427 Acyl Lipid Metabolism Gene Families AT1G01710 65.734 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02548 K01068 - gmx:100805018 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02548 13 23319204 23325625 Trre13g02548 13 23319204 23325625 ECH
Trre13g02548 13 23319204 23325625 Trre15g01179 15 9188731 9198022 PCT