Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01170 ATGGATAATTCATCAAATTTTGACTCAACTTCTTCAGTGGATCAAAATGATCATTTAATCAGTGAAACTCCTGAGTACTCACCATTCAACGGCGATTCTTTTGCGTATTGTCGGAGTAATTCCGAGGTTTCGAACTTATCTGAGGCTATTGATGACAATAGTTATGCTAGTGACCCTTCACCTTCACCATGGATGAGTGTGAAACATGGAGCTGTTCTTTCAAGATTAGGAATGAAGCAAAGAAAGCATTCATTAGATGATAAGTCTGATGATCTTGATCTATTGGAGACAGAACTTGAAATGATGAAGGAAAGATTTTCTAAGCTTCTTTTGGGAGAAGATATGTCTGGTGGTGGTAAAGGTGTTTGCACTGCAGTTACAATATCAAATTCCATTACCAATCTCTATGCAACTGTATTTGGACAAAATTTGAAGTTAGAGCCTCTAAAGGCTGAGAAAAAAGCTATGTGGAAAAGAGAAATGAATTGTCTTATGTCTGTATGTGATTACATAGTAGAATTTGCGCCAACTGCACAATACTTGGATGATGGTACAATTGTGGAGATGATGACAAGTAGACCAAGGGCAGATATTTATATCAACCTTCCAGCTCTACAAAAGCTTGACACAATGCTCATCGAAATCTTTGATAGTTTCCAGGATACTGAATTTTGGTATGCAGAACAAGGAAGCATATCAGGGAATTCAAACCGTAGTTCACATTCGAGTGCCGGTTCGCATTCAAAGGCAGGCTCGTTTCGAATAATTGCTCAAAGAAAAGATGAGAAATGGTGGTTGCCAGTTCCTTGTGTTCACTCTGGTGGGCTCTCTGATAAATCAAGGAAGCATTTGATTGAGAAAAGAGATTGTGCTAATCAAATTCATAAAGCAGCTATGGCAATAAATAGCAGTGTTCTTGCTGAGATGGATATTCCCGAAACATACATGGCAAATCTTCCCAAGAGCGGAAGATCAAGTCTAGGGGACGCAATTTATCGCTACATGCATTCTGCAGACAAGTTTTCACCCGGCAACCTTCTTGATTGTCTCAAAATAAGTACAGAACATGAAGCACTTGAACTAGCAGATAGAGTTGAATCGTCAATGTACACATGGAGACGTAAAGCTTGCATAAGCCATTCAAAATCATCATGGAACAAAGTAAAGGAATTCATGGCTGACACTGGCCAAAGTGATAAAAACTTTGTCTTAGCCGATAGAGCTGAGACTTTATTGTTTTTCTTGAAACAAAGATATCCTGAACTTTCACAAACCTCATTGGATACATGCAAGATTCAATACAATCAGGATGTAGGAAAAGCAATACTAGAAAGTTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTTGCTTGGATTGAAGATGTTCTATGTGCAGATAAATCTATGAGGAACTAA 1422 0.3819 MDNSSNFDSTSSVDQNDHLISETPEYSPFNGDSFAYCRSNSEVSNLSEAIDDNSYASDPSPSPWMSVKHGAVLSRLGMKQRKHSLDDKSDDLDLLETELEMMKERFSKLLLGEDMSGGGKGVCTAVTISNSITNLYATVFGQNLKLEPLKAEKKAMWKREMNCLMSVCDYIVEFAPTAQYLDDGTIVEMMTSRPRADIYINLPALQKLDTMLIEIFDSFQDTEFWYAEQGSISGNSNRSSHSSAGSHSKAGSFRIIAQRKDEKWWLPVPCVHSGGLSDKSRKHLIEKRDCANQIHKAAMAINSSVLAEMDIPETYMANLPKSGRSSLGDAIYRYMHSADKFSPGNLLDCLKISTEHEALELADRVESSMYTWRRKACISHSKSSWNKVKEFMADTGQSDKNFVLADRAETLLFFLKQRYPELSQTSLDTCKIQYNQDVGKAILESYSRVLEGLAFNIVAWIEDVLCADKSMRN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01170 473 Coils Coil 85 105 - -
Trre15g01170 473 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 38 472 IPR038937 GO:0005085
Trre15g01170 473 MobiDBLite consensus disorder prediction 1 31 - -
Trre15g01170 473 Gene3D PRONE domain, subdomain 1 93 344 - -
Trre15g01170 473 Gene3D PRONE domain, subdomain 1 345 473 - -
Trre15g01170 473 FunFam Rop guanine nucleotide exchange factor 14 91 341 - -
Trre15g01170 473 ProSiteProfiles PRONE domain profile. 89 473 IPR005512 GO:0005085
Trre15g01170 473 FunFam Rop guanine nucleotide exchange factor 14 343 473 - -
Trre15g01170 473 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 98 472 IPR005512 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01170 Trre-Chr15 9130024 9133217 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01170 - - gmx:100785956 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01170 15 9130024 9133217 Trre15g01170 15 9130024 9133217 ECH
Trre13g02545 13 23279450 23281963 Trre15g01170 15 9130024 9133217 PCT