Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02545 ATGGATAAATCATCCAACTTTGGTGAAAATTGTGATGTGAGGTATCATTCAGTTAGTGAAACTCCTCCTTTTTCTAGATTGAGTGGTGATTCTTTCGGATACTGCCGAGTTTGGACAAGCTCAGAGGCATCAAATTTCTCTGACACTCTAGATGATAGCAGCTATACAAGTGACTCTTCTGCTTTGCCTTCGCCTTCACCTTCTCGATGGAGGGATGTTAAACCTGGTCTTTCTAGACTAGGAATGAAACTGCGCAAGCAATCGGTCGATGATAAACATGATGATAATGCTCTCTTGGATTCAGGTGAGCTTGAAATGATGAAGGAAAGATTTGCCAAACTTCTACTAGGAGAAGACATGTCTGGTGGAGGGAAAGGTGTTTCCACAGCAGTTACAATCTCAAATGCCATTACCAATCTCTATGCAACAGTATTCGGACAAAGTTTAAAGTTGGAGCCGCTGAAGCTAGAGAAGAAAGCCATGTGGAAAAGGGAAATGAAGGTTCTTTTATCAGTGTGTGATTACATACAAGAATTTGCACCAACTGCACAATATTTAGAAGATGGCACAATTGTGGAGATGATGAAAAGCAGACCAAGGTCAGATATCTATATCAACCTCCCTGCATTACAGAAGCTTGACACAATGCTTATAGAAATATTAGATTCTTTTGAGGATACTGAGTTCTGGTATGCAGAGAATATATCAGCAAGTTCGCCTCGTTTACGTGCAACCTCATTTCGGAAGATTGTTCCAAGGAAAGACGAGAAATGGTGGTTGCCAGTTCCTTGTGTTCTCCCTGGTGGCCTCTCTGAGAAGTCAAGGAAACACCTTACAGAGAAAAGGGATTGTGCTAATCAAATTCATAAAGCGGCAATGGCAATAAATAGCAATATTCTTGCGGAAATAGATATTCCAGAAACGTATATAGATGATCTTCCAAAGCTGAAATTCTATTGCCAAGTGATTGAGGATTCCTTTAAATGTGACCCTATAAGACATATGTCTTGGAATTTATCACCAAATTTCATAAGCCTTTTATGGAAGCCAATAATAGCAGCTGAATCTTGTAGAAAACGGGACGATATAATTTCATATAAGAGTGGAAGAGGGAGTCTAGGAGACACAATTTACAACTATATGTATACTGCTGACGAGTTCTCACCCGATCGACTTCTTGACTGTCTCAAAATAAGTTCTGATCATGAAGCACTCGATCTAGCAGACAGGGTCGAATCATCTATGTACACGTGGAGACGTAAAGCTTGTCTCAGCCATTCAAAGTCATCATGGAAAGAAGTAAAAGATCTCATGGATGAAACTGATTGGAAGGACAAAAACTACATCTTAGCTGACAGAGCTGAAGCTTTGTTGTTTAGCCTCAAGCAAAGATATCCTGAACTTTCACAAACTTCTTTGGATACATGCAAGATCCAATACAACAGGGATGTGGGGAAAGCAGTACTAGAAAGCTATTCAAGAGTTTTAGAAGGCCTGGCATTCAACATTGTTGCTTGGATTGAAGATGTTCTGTATGTAGATAAATCGATGACAAATCGAGAAGTCTAG 1569 0.3983 MDKSSNFGENCDVRYHSVSETPPFSRLSGDSFGYCRVWTSSEASNFSDTLDDSSYTSDSSALPSPSPSRWRDVKPGLSRLGMKLRKQSVDDKHDDNALLDSGELEMMKERFAKLLLGEDMSGGGKGVSTAVTISNAITNLYATVFGQSLKLEPLKLEKKAMWKREMKVLLSVCDYIQEFAPTAQYLEDGTIVEMMKSRPRSDIYINLPALQKLDTMLIEILDSFEDTEFWYAENISASSPRLRATSFRKIVPRKDEKWWLPVPCVLPGGLSEKSRKHLTEKRDCANQIHKAAMAINSNILAEIDIPETYIDDLPKLKFYCQVIEDSFKCDPIRHMSWNLSPNFISLLWKPIIAAESCRKRDDIISYKSGRGSLGDTIYNYMYTADEFSPDRLLDCLKISSDHEALDLADRVESSMYTWRRKACLSHSKSSWKEVKDLMDETDWKDKNYILADRAEALLFSLKQRYPELSQTSLDTCKIQYNRDVGKAVLESYSRVLEGLAFNIVAWIEDVLYVDKSMTNREV 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02545 522 ProSiteProfiles PRONE domain profile. 94 522 IPR005512 GO:0005085
Trre13g02545 522 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 43 520 IPR038937 GO:0005085
Trre13g02545 522 MobiDBLite consensus disorder prediction 45 66 - -
Trre13g02545 522 FunFam Rop guanine nucleotide exchange factor 14 389 522 - -
Trre13g02545 522 FunFam Rop guanine nucleotide exchange factor 2 360 480 - -
Trre13g02545 522 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 367 518 IPR005512 GO:0005085
Trre13g02545 522 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 103 316 IPR005512 GO:0005085
Trre13g02545 522 Gene3D PRONE domain, subdomain 2 367 480 - -
Trre13g02545 522 Gene3D PRONE domain, subdomain 1 481 515 - -
Trre13g02545 522 Gene3D PRONE domain, subdomain 1 97 332 - -
Trre13g02545 522 FunFam Rop guanine nucleotide exchange factor 14 96 327 - -
Trre13g02545 522 MobiDBLite consensus disorder prediction 45 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02545 Trre-Chr13 23279450 23281963 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02545 - - gmx:100806086 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02545 13 23279450 23281963 Trre13g02545 13 23279450 23281963 ECH
Trre13g02545 13 23279450 23281963 Trre15g01170 15 9130024 9133217 PCT