Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01160 ATGGTTTCATTTGGAGGTGTAAATAGTGTGGTTTATGTGTTCTTGTTTGGTGTTTCTTTTGTTTTGGCTGGTGATATAGTTCATCATGATGATGTTGCTCCTACAAGGCCTGGTTGTGAGAATAACTTTGTTCTGGTCAAAGTCCCAACTTGGATCGACGGTGTGGAAAACGACGAATATGTTGGTGTTGGTGCAAGATTTGGTCCAACATTGGAATCAAAAGAAAAACATGCCAATCATACTAGAGTTGTCATAGCTGATCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTCACCAGTGAGATCATTTTGGTTCACCGAGGAAAATGTAGTTTCACAACCAAGGCAAATATAGCTGATGAAGCCGGTGCTTCAGCCATTCTCATTATAAACTATCGTACAGAACTTTTCAAGATGGTTTGTGAGGAAAATGAAACTGATGTTGATATTGGAATACCTGCTGTTATGCTTCCGCAAGATGCTGGATTAAACATGGAAAGACACATAAAAAATAACTCCATAGTGTCAATACAGTTATACTCTCCACTGCGTCCGTTGGTTGATGTTGCGGAAGTGTTTTTGTGGCTTATGGCTGTTGGTACCATTTTATGTGCTTCTTATTGGTCTGCTTGGACAGCCAGGGAAGCAGCTATTGAACAAGAGAAGCTTTTAAAGGATGCTTCAGATGACTATGTTGCAGAAAGTGTTGGTTCCCGTGGTTACGTGGAAATCAGTACCACAGCAGCAGTTTTATTCGTTGTGCTTGCTTCTTGTTTCTTGGTTATGCTATACAAATTAATGTCATTCTGGTTTCTTGAAGTTCTCGTGGTTCTATTTTGCATCGGTGGGATAGAAGGACTGCAAACTTGTTTAGTGGCTCTATTATCATGTTTCAGATGGTTTCAACATCCTGCACAAACATTCGTGAAGATACCGTTCTTTGGAGCTGTTCCATATCTGACACTTGCTGTTACTCCCTTCTGCGTAGTGTTTGCGGTTGTTTGGGCAGTTAAACGCCATGCATCATATGCTTGGATTGGCCAAGATATTCTTGGTATCGCGTTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTCAAGGTTGGGACTGTTCTTCTCAGTTGTGCTTTCCTATATGACATATTATGGGTGTTCGTCTCTAAATGGTGGTTCCATGAGAGTGTGATGATAGTGGTAGCTCGAGGTGATAAGAGTGGAGAAGACGGTATTCCCATGCTTCTCAAGTTACCACGTTTGTTTGATCCTTGGGGTGGCTACAGCATCATCGGTTTTGGAGATATAATCTTACCGGGACTTCTAGTAGCATTTTCACTAAGGTATGATTGGTTGGCAAAGAAGAACCTTCGAGCCGGATACTTTGTGTGGGCAATGACTGCTTATGGTTTAGGTCTCCTCATCACATATGTGGCTTTAAACTTGATGGATGGACATGGCCAGCCAGCTTTACTTTATATAGTCCCATTTACACTCGGCACTTTTCTGTCACTGGGAAAGAAGAGAGGTGATCTCAAGATTTTATGGACGCGAGGAGAACCAGAAAGACTGTGTCCTCATCATATTCAAGAAGACAATTAA 1605 0.4143 MVSFGGVNSVVYVFLFGVSFVLAGDIVHHDDVAPTRPGCENNFVLVKVPTWIDGVENDEYVGVGARFGPTLESKEKHANHTRVVIADPPDCCSKPKNKLTSEIILVHRGKCSFTTKANIADEAGASAILIINYRTELFKMVCEENETDVDIGIPAVMLPQDAGLNMERHIKNNSIVSIQLYSPLRPLVDVAEVFLWLMAVGTILCASYWSAWTAREAAIEQEKLLKDASDDYVAESVGSRGYVEISTTAAVLFVVLASCFLVMLYKLMSFWFLEVLVVLFCIGGIEGLQTCLVALLSCFRWFQHPAQTFVKIPFFGAVPYLTLAVTPFCVVFAVVWAVKRHASYAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDILWVFVSKWWFHESVMIVVARGDKSGEDGIPMLLKLPRLFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKKNLRAGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGDLKILWTRGEPERLCPHHIQEDN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01160 534 PANTHER SIGNAL PEPTIDE PEPTIDASE 68 522 IPR007369 GO:0004190|GO:0016020
Trre15g01160 534 Pfam Signal peptide peptidase 241 521 IPR007369 GO:0004190|GO:0016020
Trre15g01160 534 SMART psh_8 241 510 IPR006639 GO:0004190|GO:0016020
Trre15g01160 534 Gene3D - 39 183 - -
Trre15g01160 534 Pfam PA domain 89 165 IPR003137 -
Trre15g01160 534 SUPERFAMILY PA domain 99 137 IPR046450 -
Trre15g01160 534 FunFam Signal peptide peptidase-like 3 45 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01160 Trre-Chr15 9034264 9040118 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01160 K09597 - gmx:100795197 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01160 15 9034264 9040118 Trre15g01160 15 9034264 9040118 ECH
Trre13g02535 13 23131899 23136798 Trre15g01160 15 9034264 9040118 PCT