Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02535 ATGGTTTCATTTCGTGATTCTTGTACTACTTATTATGCTCTCTTCTCTGTGTTCATGCTTCTTCTTACTGTTACTTTTGCTGGTGATATAGTACATCCTGATAGTATTGCTCCCAAAAAACCTGGATGTGACAACAACTTTGTTCTGGTCAAAGTTCCAACTTGGATTGATGGTGTAGAAAGTGGCGAGTATGTCGGTGTTGGTGCAAGATTTGGACCTACATTGGAATCAAAAGAAAAGCGGGCAAACCATACTAGAGTTGCCATTGCAGACCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTTACCGGCGAGGTCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTGATTATAAATAACCATGCAGGACTTTTCAAGATGGTTTGTGAAGCTAACGAAACCGATATTGATATTGGAATACCTGCTGTCATGCTTCCACAAGATGCCGGTGAAACCTTGAAAAATTATATACAAAACAAATCCACAGTGTCTGTGCAGTTATACTCTCCAAAACGTCCACAGGTCGATGTTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATTCTCTGTGCTTCTTACTGGTCTGCCTGGACTGCCAGAGAAGGTGCTATTGAGCGAGAGAAGCTATTAAAGGATGATTCAAATGAGTATCTAAATACAGAGAATGCTGGTTCCAGTGGTTATGTGGAAATAAGTACAGTAGCAGCAGTTTTATTTGTTGTGATCGCTTCTTGTTTCTTGTTTATGCTTTACAAACTAATGTCATACTGGTTTGTTGAAATTCTGGTGGTTCTGTTTTGCATTGGTGGGGTTGAGGGACTGCAAACTTGCTTGGTGGCTCTTTTATCATGTTTCAGCTGGTCTCAACATGCTGCACAAACATATGTCAAAATACCCTTCTTTGGTGCTGTATCATATCTCACACTTGCCGTTACTCCCTTCTGCATAGCGTTTGCTGTGGTTTGGGGAGTTAAACGCCGTGTATCGTATGCCTGGATTGGTCAAGATATTCTTGGTATAGCTTTGATAATTACGGTTCTTCAGATTGTCCACATACCAAATCTCAAGGTTGGAACTGTTCTACTCGGCTGTTCCTTTGTATATGACATCATCTGGGTGTTTCTGTCTAAACTTGTGTACCATGAGAGTGTGATGATAGTGGTAGCTCGTGGTGATAGAAGTGGAGAAGATGGCATCCCCATGCTACTCAAGATACCGCGTTTATTCGATCCTTGGGGTGGTTACAGTATCATCGGTTTCGGGGACATAATCTTGCCAGGCCTTCTAGTAGCATTTTCATTAAGGTATGATTGGTTAGCAAAGAGGAACCTTCGATCCGGATACTTCTTGTGGGCAATGAGTGCTTATGGTTTAGGTCTGCTTGTCACATACTTAGCTTTGAATTTGATGGATGGGCATGGTCAACCAGCTTTGCTGTATATAGTCCCATTTACACTTGGAACCTTTTTGTCACTGGGAAAGAAGAGAGGTGAACTCGAAATCTTATGGACAAGAGGGCAACCAAAAATGGCTTGCCCTCACATTCAAGAGGATCATCAACCAGTGGAACAGTAA 1632 0.421 MVSFRDSCTTYYALFSVFMLLLTVTFAGDIVHPDSIAPKKPGCDNNFVLVKVPTWIDGVESGEYVGVGARFGPTLESKEKRANHTRVAIADPPDCCSKPKNKLTGEVILVHRGQCSFTTKANIAEEAGASAILIINNHAGLFKMVCEANETDIDIGIPAVMLPQDAGETLKNYIQNKSTVSVQLYSPKRPQVDVAEVFLWLMAVGTILCASYWSAWTAREGAIEREKLLKDDSNEYLNTENAGSSGYVEISTVAAVLFVVIASCFLFMLYKLMSYWFVEILVVLFCIGGVEGLQTCLVALLSCFSWSQHAAQTYVKIPFFGAVSYLTLAVTPFCIAFAVVWGVKRRVSYAWIGQDILGIALIITVLQIVHIPNLKVGTVLLGCSFVYDIIWVFLSKLVYHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKRNLRSGYFLWAMSAYGLGLLVTYLALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELEILWTRGQPKMACPHIQEDHQPVEQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02535 543 SUPERFAMILY PA domain 102 158 IPR046450 -
Trre13g02535 543 PANTHER SIGNAL PEPTIDE PEPTIDASE 72 533 IPR007369 GO:0004190|GO:0016020
Trre13g02535 543 Pfam Signal peptide peptidase 247 525 IPR007369 GO:0004190|GO:0016020
Trre13g02535 543 SMART psh_8 246 515 IPR006639 GO:0004190|GO:0016020
Trre13g02535 543 Gene3D - 43 188 - -
Trre13g02535 543 Pfam PA domain 93 170 IPR003137 -
Trre13g02535 543 FunFam Signal peptide peptidase-like 3 49 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02535 Trre-Chr13 23131899 23136798 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02535 K09597 - gmx:100808921 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02535 13 23131899 23136798 Trre13g02535 13 23131899 23136798 ECH
Trre13g02535 13 23131899 23136798 Trre15g01160 15 9034264 9040118 PCT