Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01159 ATGTCAGAAACTGACATGGCAGTTATGAAACCTGAGATGATGAAGCCTTATGTGTGGCTTCAAACGTCCGATGATTCAATCCAACAAGTGGAACAAGAGATTGCGATGTTTTGCCCATTTATATGTCAAGAAATAATACAAAAAGGCATGGGAACTTCCAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCAATGTTGAGCTTAATTCTTGATTATTGTCGATTTCATCAAGTACTAGGCCGCTCAAACAAGGAACGGAAGGCGTATGATGAGAAATTCGTTAGGATAGACACAGAGAAGCTCTGTGAGTTGACGTCTGCTGCGGACAGCCTTCAGTTAAAGCCATTGGTTGATCTCACCAGTCGTGCACTAGCTCGAATAATTGAAGGAAGATCACCAGAGGAGATACGTGACATATTTCATTTGCCTGATGATCTTACAGAGGAAGAAAAATTGGAGCCCTTGAGAAACATAACTGACGACCCAAGAATTAGGCTTTTGAACCGCTTGTATGCCAAGAAGAGGAAAGAACTTAAAGAGCGTGAAAGGATAAAGAATGTTGAAGTTGAAGAAGAACATGTAGATGAGCGTTCAGTTGATGACCTTTTGTCTTTTATTAATGGAAATGATAGAGATCCGAAGGGGATTAAAACTTCCAAGAATAAAAAGAAGAACCGAAGGAAAAAAGACCAACAGAAGAATTCTTCTTTGAAGGAGGAAGTATCTGTACCAGATAAGAAGGAGGTGGTAAACGGCCATAATATCAGACACCAAAGTTCGGAAGCTGATGGACCGTGTGAGACTTCAAATTTACACCATACATATGACGATCCTATGCTTGAGTTCGATGATGATGATACTGATGATGAGATCGATCCAGCATTAAAAGCAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCAGATTAAATTGTGACTGGCCAGAGAGAATAAAAGACTTTTTCTCGTCAGCGCAAGAAAGGAAGACAATGCTTTCTACTACCAATGGGAATGGTTTTCTAAGGCGACATGCTTGTACGCTTCTTCCATGTGTCTCAGTATTTTACCTTACCTATCATGACTTTGCTTTCAGAGTGGAAATGAATCCTCCCAGATGGCCATTGGCTTGA 1140 0.4061 MSETDMAVMKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPFICQEIIQKGMGTSKNCAICLPQQVSPAMLSLILDYCRFHQVLGRSNKERKAYDEKFVRIDTEKLCELTSAADSLQLKPLVDLTSRALARIIEGRSPEEIRDIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAKKRKELKERERIKNVEVEEEHVDERSVDDLLSFINGNDRDPKGIKTSKNKKKNRRKKDQQKNSSLKEEVSVPDKKEVVNGHNIRHQSSEADGPCETSNLHHTYDDPMLEFDDDDTDDEIDPALKAKIDREVEDFARRLNCDWPERIKDFFSSAQERKTMLSTTNGNGFLRRHACTLLPCVSVFYLTYHDFAFRVEMNPPRWPLA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01159 379 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Trre15g01159 379 MobiDBLite consensus disorder prediction 207 247 - -
Trre15g01159 379 SMART skp1_3 15 116 IPR001232 GO:0006511
Trre15g01159 379 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Trre15g01159 379 SUPERFAMILY POZ domain 16 80 IPR011333 -
Trre15g01159 379 PANTHER SKP1 14 155 IPR016897 GO:0006511
Trre15g01159 379 SUPERFAMILY Skp1 dimerisation domain-like 91 159 IPR036296 GO:0006511
Trre15g01159 379 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Trre15g01159 379 Coils Coil 223 243 - -
Trre15g01159 379 FunFam SKP1-like protein 21 isoform X1 12 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01159 Trre-Chr15 9012743 9017707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01159 - - gmx:100794666 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01159 15 9012743 9017707 Trre15g01159 15 9012743 9017707 ECH
Trre15g01159 15 9012743 9017707 Trre13g02534 13 23123107 23129910 ECH
Trre13g02534 13 23123107 23129910 Trre15g01159 15 9012743 9017707 PCT