Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02534 ATGTCGGAAATCGACATGTCAGTTATTAAACCTGAGATGATGAAGCCCTATATTTGGCTTCAGACTTCAGATGGGTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGTCCTTTCATTTGTCAAGAAATAATACAAAAAGGCACGGGATCTTCCAAAAATTGTGCGATATGCCTTCCTGAAAAAGTCAGTCCAGCTATGCTGAGCTTAGTTCTTGATTATTGTCGATTTCATCAAGTGCCAGGCCGCTCAAACAAGGAACGGAAGTCTCACGATGAAAAATTCATCAGGATGGATACCAAACGGCTCTGTGACTTGACATCAGCTGCAGATAGCCTTCAATTAAGGCCGCTGGTTGATCTTACAAGTCGTACACTTGCAAGAATAATTGAAGGAAAATCTCCCGAAGAGATACGAGAGATATTTCATTTGCCGGATGATCTTACAGAGGAAGAGAAGTTGGAGCCTCTGAAAAACACAACTGATGATCCGAGGATAAGGCTTTTGAACCGGTTGTATGCGAAAAAAAGGAAAGAGCTAAAAGAGCGTGGGAGGTTAAAGAATGTTGAATTAGAAGAAGAACATGTAGATGAACGCTCGGTTGATGACCTTTTGTCTTTTATTAATGGAAATGATGGAGATTCAAAAGGGTCTAAAACTTCTAAGAATAAAAAGAAGAATAGAAGAAAAAAAGAGCAGAAGAAAAACTCTACTTTGACTGAAGCTTCCGAAGTGAAAAAGGAGTTAAGTGGTCATAGTGCTGTATCTGATAAAATTGCTGGGACCTCAAATATGTATACAGAAGATGACACTTTTAGTCATAAAGAGTTTGATGATGATGAAGATGTAGATGATGAGATCGACCCTGCACTGCAGGCAAAAATTGACAGGGAAGTTGAAGATTTTGCCCGCCGTTTAAATTCTGACTGGCCAGAAAGGATGCAAGAATTTTTATCATCAGGGCAAGAAAGGAAATCAATGCTTTTTGCTACCAACGGGAATGGTTTTCTAAGACGAAATACTTGTACGACTGGAGTCGAGGGAAATGAAACCACGCAAGCCGACCCATCTGGCCAATGGCTTGAACAATTTTGA 1098 0.3989 MSEIDMSVIKPEMMKPYIWLQTSDGSIQQVEQEIAMFCPFICQEIIQKGTGSSKNCAICLPEKVSPAMLSLVLDYCRFHQVPGRSNKERKSHDEKFIRMDTKRLCDLTSAADSLQLRPLVDLTSRTLARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERGRLKNVELEEEHVDERSVDDLLSFINGNDGDSKGSKTSKNKKKNRRKKEQKKNSTLTEASEVKKELSGHSAVSDKIAGTSNMYTEDDTFSHKEFDDDEDVDDEIDPALQAKIDREVEDFARRLNSDWPERMQEFLSSGQERKSMLFATNGNGFLRRNTCTTGVEGNETTQADPSGQWLEQF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02534 365 MobiDBLite consensus disorder prediction 207 268 - -
Trre13g02534 365 SUPERFAMILY Skp1 dimerisation domain-like 91 160 IPR036296 GO:0006511
Trre13g02534 365 MobiDBLite consensus disorder prediction 342 365 - -
Trre13g02534 365 SUPERFAMILY POZ domain 16 80 IPR011333 -
Trre13g02534 365 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Trre13g02534 365 Pfam Skp1 family, dimerisation domain 118 154 IPR016072 GO:0006511
Trre13g02534 365 SMART skp1_3 15 116 IPR001232 GO:0006511
Trre13g02534 365 MobiDBLite consensus disorder prediction 235 254 - -
Trre13g02534 365 Coils Coil 223 243 - -
Trre13g02534 365 PANTHER SKP1 14 155 IPR016897 GO:0006511
Trre13g02534 365 FunFam SKP1-like protein 21 isoform X1 12 162 - -
Trre13g02534 365 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02534 Trre-Chr13 23123107 23129910 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02534 - - gmx:100809439 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02534 13 23123107 23129910 Trre13g02534 13 23123107 23129910 ECH
Trre15g01159 15 9012743 9017707 Trre13g02534 13 23123107 23129910 ECH
Trre13g02534 13 23123107 23129910 Trre15g01159 15 9012743 9017707 PCT