Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01153 ATGAGCGGTTTGATTTCTAACCGCAATTTTGGTTCCTTCGTTGCTTCAGGGAATTCATATAGATCACAAAAGGATCTGTCAAGTCAAAGAGGGGGAATTTCTGTTTCGGGTGCATTGGTTACACGGTATGGTGACAGGATTGCGAAGGATCCTCTTTCAAGATGCCAGAATGCAATGCATTCTCATATTGGTTCTTCTTTGGAAGAGAGAGTTTCAAAACAAATACAAACATTCAATAACAAAAGGGAGATTTTTTCTCTATTATCCCAACAATCCAGCCGCTGCTCGAACTTCAAATTAAAAACTTGCAAAAGAAGTCATTCTCACCTTTCTTCAGCTCCCTTTAGCAGTAGCTATATCAAACAATTTGGTTTGAGCAAAAGAAAGCACCGACAACCTGAGGTTGGTAAAGCAAATAAGTTTCGTGTTTGTTACAAGTCTGAGGAGTACGAATTTGCAGAACCAAATATAGATAAGCTGAAATCAACTGAAGGGACTGGTGAAGCCATTCTTTTGGAAGGAAATCTGCATCAAATATCTCCTTGGTGGCAGCAGTTTCCTAAGCGTTGGGTTATTGTACTGCTATGTTTTACAGCATTTCTTCTTTGTAATATGGATCGCGTAAATATGAGCATAGCAATACTTCCAATGTCTCAAGAGTTCAACTGGAACAGTGCAACAGTTGGCCTCATTCAGTCCTCCTTTTTCTGGGGTTATCTACTTACACAGATTGTTGGTGGCATTTGGGCAGACAAAGTTGGTGGGAAGCTAGTACTAGGTTTTGGAGTTATATGGTGGTCAATTGCAACAGTTTTAACTCCTGTTGCTGCAAAACTAGGGCTACCATATCTGCTTGTTATGCGTGCCTTTATGGGAATTGGCGAGGGTGTTGCAATGCCTGCAATGAATAATATACTTTCCAAGTGGATTCCAGTATCAGAGAGAAGCAGATCACTTGCGCTAGTATATAGTGGAATGTACCTAGGTTCTGTCACAGGCTTGGCATTCTCGCCTTTTCTAATTCACAAATTTGGGTGGCCATCTGTGTTTTACTCATTTGGATCACTTGGAAGTATCTGGTTTGCCTTGTGGTTGAAAAAAGCATATAGCACCCCAAAAGAAGATCCAGATCTCGGGGAAGAAGAGAAAAGGCTCATACTTGGAGGAAGCGTATCAAAAGAACCTGTGACAGTTATTCCTTGGAAATTGATTTTATCAAAAGCACCTGTTTGGGCTTTAATAGTCTCTCATTTCTGCCACAATTGGGGAACATTTATTCTATTAACCTGGATGCCTACATACTACAATCAGGTTCTGAAGTTCAACCTCACGGAATCGGGGCTCTTATGTGTCCTTCCATGGTTAACCATGGCCGTTTTTGCAAATATAGGAGGTTGGATTGCTGACACACTTGTGAGCAAAGGCCTTTCCATAACAACTGTTCGAAAGATCATGCAATCAATAGGGTTTCTCGGTCCTGCATTTTTTCTTACACAGCTAAGTCATGTCAGAACACCCGCCATGGCAGTACTATGCATGGCTTGCAGTCAGGGATGTGACGCATTCTCACAATCTGGTCTATATTCCAATCACCAAGACATTGGACCACGCTATGCCGGAGTTTTGCTGGGACTATCGAATACGGCAGGAGTGCTTGCCGGTGTCTTTGGTACAGCTGCGACTGGATACATACTCCAACGAGGTTCATGGAACGATGTATTTAAAGTCTCTGTTGTATTGTACTTAATCGGCACTTTGGTCTGGAATATCTTTTCAACTGGTGAAAAAATTCTAGACTGA 1800 0.4172 MSGLISNRNFGSFVASGNSYRSQKDLSSQRGGISVSGALVTRYGDRIAKDPLSRCQNAMHSHIGSSLEERVSKQIQTFNNKREIFSLLSQQSSRCSNFKLKTCKRSHSHLSSAPFSSSYIKQFGLSKRKHRQPEVGKANKFRVCYKSEEYEFAEPNIDKLKSTEGTGEAILLEGNLHQISPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQIVGGIWADKVGGKLVLGFGVIWWSIATVLTPVAAKLGLPYLLVMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPFLIHKFGWPSVFYSFGSLGSIWFALWLKKAYSTPKEDPDLGEEEKRLILGGSVSKEPVTVIPWKLILSKAPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSKGLSITTVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGCDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVSVVLYLIGTLVWNIFSTGEKILD 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01153 599 Gene3D MFS general substrate transporter like domains 404 596 IPR036259 -
Trre15g01153 599 CDD MFS_SLC17A9_like 193 592 IPR044777 -
Trre15g01153 599 Gene3D MFS general substrate transporter like domains 187 376 IPR036259 -
Trre15g01153 599 FunFam ascorbate transporter, chloroplastic isoform X2 187 376 - -
Trre15g01153 599 ProSiteProfiles Major facilitator superfamily (MFS) profile. 192 596 IPR020846 GO:0022857
Trre15g01153 599 Pfam Major Facilitator Superfamily 196 557 IPR011701 GO:0022857|GO:0055085
Trre15g01153 599 SUPERFAMILY MFS general substrate transporter 178 591 IPR036259 -
Trre15g01153 599 PANTHER SOLUTE CARRIER FAMILY 17 182 596 - -
Trre15g01153 599 FunFam ascorbate transporter, chloroplastic isoform X1 397 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01153 Trre-Chr15 8982390 8987331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01153 1 599 Organic Solute Cotransporters AT4G00370 71.786 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01153 K08193 - gmx:100793618 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01153 15 8982390 8987331 Trre15g01153 15 8982390 8987331 ECH
Trre13g02531 13 23103408 23107705 Trre15g01153 15 8982390 8987331 PCT