Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02531 ATGTCTATAAGTGGTTTAATTTCCAACAGAAACTTCACTTCTTTCATTGCTTCAGGAAATGTATATCAATTGAGAAAAGATCTATCACTTCAAAGAGGGAGCGTTTTTGGCGTGCAACGTGGTGGCCAGATTCCAAACAATCCTTTTGCAAGAAGCAGAAGCAATATTGAACAAAGAGTTGTTGTATATGGACTAGGAGTAAGAAATCTTAGTAAGGTGAATAGAGCTTGTGTTCATTACAGGTCAGAGGAATATGACATTGATGAAACAAAGATGGATCCCGTGGTATTTGATGAAGGAAATAGTGCATCGTTATCTCCTTGGTGGAAGCAGCTTCCTAAGCGCTGGCTTATCGTATTACTATGTTTTACAGCATTTCTTCTATGCAACATGGACCGTGTAAATATGAGCATAGCGATACTTCCAATGTCACAAGAGTTTAACTGGAACAGTGCAACAGTTGGCTTAATTCAATCATCTTTTTTCTGGGGCTATCTTCTTACTCAGATTCTTGGTGGCATATGGGCAGACAAATTTGGTGGGAAGGTAGTGCTAGGTTTTGGCGTTGTATGGTGGTCAATGGCAACAATTTTAACACCTATTGCTGCAAGAATTGGGCTCCCTTATTTGCTTGTTATGCGCGCCTTTATGGGAATTGGTGAGGGTGTAGCCATGCCTGCCATGAATAATATACTGTCCAAGTGGATTCCGGTTTCGGAGAGAAGCAGATCACTTTCGCTAGTATATAGTGGCATGTACCTTGGTTCTGTGGTAGGTTTGGCATTCTCGCCTTTCCTAATCCAAACCCTTGGCTGGCCATCCGTGTTTTACTCATTTGGATCCCTTGGAAGTATCTGGTTTGCCTTTTGGTTGAGAAAAGCATATAGCTCACCAAAAGATGATCCGGATCTCCGGCCGGAGGAAAAAAGGCTCATACTTGAAGGTGGCGTATCAAAAGCAGCGGTTTCAAACATTCCATGGAAATTAATTTTATCAAAAGCACCAGTTTGGGCTCTTATAATCTCTCATTTCTGCCACAATTGGGGGACATTTATTCTATTAACATGGATGCCTACTTATTACAATCAGGTTCTGAAGTTCAACCTCACCGAATCTGGTCTCTTATGCGTTCTTCCGTGGTTAACCATGGCTATTTTTGCAAATATCGGAGGGTGGATAGCTGACACGTTAGTTAGCAGAGGCGTTTCCATAACAGCTGTTCGAAAGATCATGCAATCGATCGGGTTTCTAGGTCCTGCCTTTTTTCTGACACAACTGAGCCATGTCAAAACACCTGCCATGGCAGTATTGTGCATGGCATGCAGTCAGGGATCTGATGCATTCTCACAATCTGGTCTTTATTCCAATCACCAAGACATTGGACCGCGCTATGCTGGAGTATTGCTGGGACTATCGAACACCGCAGGTGTGCTTGCAGGTGTTTTTGGCACGGCTGCAACTGGATACATACTCCAAAGAGGTTCTTGGAATGATGTGTTTAAGGTTTCTGTTGCATTGTACATAATAGGCACATTGGTATGGAATATCTTTTCAACTGGGGAGAAGATCCTTGACTAA 1578 0.4252 MSISGLISNRNFTSFIASGNVYQLRKDLSLQRGSVFGVQRGGQIPNNPFARSRSNIEQRVVVYGLGVRNLSKVNRACVHYRSEEYDIDETKMDPVVFDEGNSASLSPWWKQLPKRWLIVLLCFTAFLLCNMDRVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSMATILTPIAARIGLPYLLVMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLSLVYSGMYLGSVVGLAFSPFLIQTLGWPSVFYSFGSLGSIWFAFWLRKAYSSPKDDPDLRPEEKRLILEGGVSKAAVSNIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVSRGVSITAVRKIMQSIGFLGPAFFLTQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVSVALYIIGTLVWNIFSTGEKILD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02531 525 Gene3D MFS general substrate transporter like domains 113 302 IPR036259 -
Trre13g02531 525 ProSiteProfiles Major facilitator superfamily (MFS) profile. 118 522 IPR020846 GO:0022857
Trre13g02531 525 FunFam ascorbate transporter, chloroplastic isoform X1 323 523 - -
Trre13g02531 525 SUPERFAMILY MFS general substrate transporter 106 517 IPR036259 -
Trre13g02531 525 CDD MFS_SLC17A9_like 119 518 IPR044777 -
Trre13g02531 525 PANTHER SOLUTE CARRIER FAMILY 17 108 522 - -
Trre13g02531 525 Gene3D MFS general substrate transporter like domains 330 522 IPR036259 -
Trre13g02531 525 Pfam Major Facilitator Superfamily 122 483 IPR011701 GO:0022857|GO:0055085
Trre13g02531 525 FunFam ascorbate transporter, chloroplastic isoform X2 113 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02531 Trre-Chr13 23103408 23107705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02531 1 525 Organic Solute Cotransporters AT4G00370 74.681 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02531 K08193 - gmx:100793618 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02531 13 23103408 23107705 Trre13g02531 13 23103408 23107705 ECH
Trre13g02531 13 23103408 23107705 Trre15g01153 15 8982390 8987331 PCT