LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g01111	ATGGGATTGGGGAGTGAGAGTTTTCAACTTCTATCCAAAATTGCAACCAATGACCAACATGGTGAAAATTCTCCATACTTTGATGGGTGGAAAGCATATGAGGAAAACCCATTTCACCCTACAAAAAATCCTCATGGTGTAATCCAGATGGGTCTTGCTGAAAATCAGCTCTGCTTTGATCTAATAGAAGAATGGATAAAGAATAATCCCAAGGCTTCAATTTGCACTCCAGAAGGAATGCATAATTTCAGAGATATTGCTAACTTTCAAGATTATCATGGGCTGCCAGAGTTTACAAATGCTATGGCAACATTTATGTCAAAAGTGAGAGGTGGTAGGGTGAGATTTGATCCAAACCGTATATTGATGAGTGGAGGGGCAACAGGGGCAAATGAATTAATCATGTTTTGTTTGGCTGATCCTGGAGATGCTTTTCTAGTTCCTACCCCTTACTATCCAGGATTTGTTCGCGACTTGTGTTGGAGAACTAAGGTTCAATTAATTCCCGTCCATTGTGATAGCTCCAACAATTTCAAGATAACAAGAGAAGCACTTGAAGTAGCATACAACAAAGCACAAAAAGATAACATCAATATAAAAGGATTGATCATAACAAACCCTTCCAACCCATTAGGCACAACCTTAGACAAAGAAACACTAAGGAGTCTTATAAGCTTTATAAATGAGAAAACAATCCATTTAGTTTGTGATGAAATATATGCAGCCACTGTTTTCACATCTCCAACCTATGTAAGTGTTAGTGAAGTCATACAAGAAATGAATTGCAACCTTGATCTCATTCACATTATTTATAGTTTATCAAAAGACTTAGGGTTCCCTGGTTTTAGGGTTGGGATAATTTATTCATATAATGATCAAGTGGTGAATTGTGGAAGAAAAATGTCAAGCTTTGGATTAGTCTCATCTCAAACTCAACACATGCTTGCTTCAATGCTTAGTGATGAAAAATTTGTTGACAAGTTTCTTTTGGAGAGTTCAAGAAGGTTATCTAAAAGACATGAAAAATTTACAAAGGGACTTGAAGAGGTTGAGATTAGTCGATTTCCAAGTAATGCGGGACTTTTTTGCTGGATGAACTTGAAAAGTTTGCTTAAAGAGGTAACAATTGAAGAAGAGTTGAAGCTTTGGCGCGTGATTATTAATGAGGTGAAGCTTAATGTGTCACCGGGGTCCTCTTTTAATTGTTCCGAGGTTGGTTGGTTTAGGGTTTGTTTTGCTAATATTGATGATGAAACAGTAGAAGTTGCACTTAAAAGAATAAGAGATTTTATTGGCAAAGAAACAAAGAAGAAAGTTGAACAAGTTAAACGTTGGCAACCAAATTTAAGGCTTAGCTTCACTTCAAGGAGGTTTGATGAGACTGTTTTGTCACCTCATAATCACATAATCATCTCTCCTCATTCACCACTTGTTCGAGCCACATGA	1446	0.3693	MGLGSESFQLLSKIATNDQHGENSPYFDGWKAYEENPFHPTKNPHGVIQMGLAENQLCFDLIEEWIKNNPKASICTPEGMHNFRDIANFQDYHGLPEFTNAMATFMSKVRGGRVRFDPNRILMSGGATGANELIMFCLADPGDAFLVPTPYYPGFVRDLCWRTKVQLIPVHCDSSNNFKITREALEVAYNKAQKDNINIKGLIITNPSNPLGTTLDKETLRSLISFINEKTIHLVCDEIYAATVFTSPTYVSVSEVIQEMNCNLDLIHIIYSLSKDLGFPGFRVGIIYSYNDQVVNCGRKMSSFGLVSSQTQHMLASMLSDEKFVDKFLLESSRRLSKRHEKFTKGLEEVEISRFPSNAGLFCWMNLKSLLKEVTIEEELKLWRVIINEVKLNVSPGSSFNCSEVGWFRVCFANIDDETVEVALKRIRDFIGKETKKKVEQVKRWQPNLRLSFTSRRFDETVLSPHNHIIISPHSPLVRAT	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g01111	481	CDD	AAT_like	88	429	-	-
	Trre15g01111	481	SUPERFAMILY	PLP-dependent transferases	16	432	IPR015424	-
	Trre15g01111	481	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	11	429	-	-
	Trre15g01111	481	Gene3D	Aspartate Aminotransferase, domain 1	36	426	IPR015422	GO:0003824
	Trre15g01111	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	120	140	-	-
	Trre15g01111	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	232	255	-	-
	Trre15g01111	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	83	99	-	-
	Trre15g01111	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	298	321	-	-
	Trre15g01111	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	196	220	-	-
	Trre15g01111	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	142	163	-	-
	Trre15g01111	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	50	76	-	-
	Trre15g01111	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	266	290	-	-
	Trre15g01111	481	Gene3D	-	70	321	IPR015421	GO:0003824
	Trre15g01111	481	Pfam	Aminotransferase class I and II	48	427	IPR004839	GO:0009058\|GO:0030170
	Trre15g01111	481	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	272	285	IPR004838	GO:0003824\|GO:0009058\|GO:0030170

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g01111	Trre-Chr15	8598409	8602471	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g01111	K20772		-	gmx:100813347	820.461

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre15g01111	15	8598409	8602471	Trre15g01111	15	8598409	8602471	ECH
	Trre13g02463	13	22130874	22134300	Trre15g01111	15	8598409	8602471	PCT