Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02463 ATGTCTTTGGAAAATAAGAATCACCAACTTTTGTCAAAGATTGCTACCAATGATAAACATGGTGAAAATTCTCCTTATTTTGATGGTTGGAAAGCTTATGAATCAAACCCATTTCACCCCACAAAAAATCCTCAGGGTGTTATCCAAATGGGTCTTGCTGAAAATCAGCTCTGCTTCGATCTTATTGAAGAGTGGATAAGGAACAATCCAAAAGCCTCAATTTGTACTCTAGAAGGTGTGAATGAATTCAGAAATATTGCAAACTTTCAAGACTATCATGGATTGCCAGAATTCAGAAATGCTGTGGCAAATTTCATGTCAAAAGTGAGAGGTGGTAGGGTAAGATTTGATCCTGACCGTATATTGATGAGTGGTGGAGCAACAGGGGCAAATGAATTAATCATGTTCTGTTTGGCTGATCCTGGTGATGCCTTTTTGGTTCCTAGCCCTTATTATCCAGCATTTGTTCGTGATTTGTGTTGGAGAACCGGTGTGCAACTAATTCCTGTCCAATGTCATAGCTCAAACAATTTCAAGATAACAAGAGAAGCACTTGAAGAAGCTTATATGAAAGCACAAGAAAGAAACATCAATGTGAAAGGGTTAATCATAACAAATCCATCAAACCCTCTAGGAACAACAATAGAAAAAGAAACACTAAAGAGCATAGTTAGTTTCATAAATGAAAACAACATTCATTTAGTGTGTGATGAAATCTATTCCGGCACAGTTTTCGACACTCCGAAATACGTAAGTGTCGCCGAAGTTATACAAGAAATGGAAGAATGCAAAAAAGACCTCATTCATATCATATATAGTTTATCAAAAGACATGGGACTTCCGGGTTTCAGAGTCGGTTTAGTTTATTCGTACAACGATGAAGTTGTGAATTGCGGTCGAAAAATGTCGAGTTTTGGATTAGTCTCATCGCAGACACAACATTTTCTAGCCTCAATGCTCTCGGACAATAAATTTGTGGACAAGTTTTTGGCCGAGAGTTCGAGAAGGCTAAAGGAAAGACGCGAATTTTTCACAAAGGGACTTGAAAAAGTCAACATTACTTGCTTACCAAGTAATGCAGGGCTTTTCTTTTGGATGAATTTGAGGAGCTTATTGAAAGAGAAAACATTTGAAGGTGAAATGAAACTATGGCGTTTGATAATCAATGAGGTGAAGCTTAATGTGTCACCGGGCTCGGCTTTCGATTGCTCTGAGCCTGGTTGGTACAGAGTTTGTTTTGCTAACATGGATCATGAAACTGTTGAAATTGCATTGATGAGAATAAGAGCATTTGTTAACGGCAGAGACAATGGGAAAAATATGGAAATGAAACGTTGGAAGAGTAATCTAAGACTTAGCTTTTCTTCAAGAAGGTTTGATGAGAAGGTTATGTCTCCTCACATGATGTCTCCTCATTCACCAATGCCTCATTCACCACTTGTTCGAGCTACTTAA 1455 0.3808 MSLENKNHQLLSKIATNDKHGENSPYFDGWKAYESNPFHPTKNPQGVIQMGLAENQLCFDLIEEWIRNNPKASICTLEGVNEFRNIANFQDYHGLPEFRNAVANFMSKVRGGRVRFDPDRILMSGGATGANELIMFCLADPGDAFLVPSPYYPAFVRDLCWRTGVQLIPVQCHSSNNFKITREALEEAYMKAQERNINVKGLIITNPSNPLGTTIEKETLKSIVSFINENNIHLVCDEIYSGTVFDTPKYVSVAEVIQEMEECKKDLIHIIYSLSKDMGLPGFRVGLVYSYNDEVVNCGRKMSSFGLVSSQTQHFLASMLSDNKFVDKFLAESSRRLKERREFFTKGLEKVNITCLPSNAGLFFWMNLRSLLKEKTFEGEMKLWRLIINEVKLNVSPGSAFDCSEPGWYRVCFANMDHETVEIALMRIRAFVNGRDNGKNMEMKRWKSNLRLSFSSRRFDEKVMSPHMMSPHSPMPHSPLVRAT 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02463 484 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 9 432 - -
Trre13g02463 484 CDD AAT_like 88 430 - -
Trre13g02463 484 Pfam Aminotransferase class I and II 48 428 IPR004839 GO:0009058|GO:0030170
Trre13g02463 484 Gene3D Aspartate Aminotransferase, domain 1 36 427 IPR015422 GO:0003824
Trre13g02463 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Trre13g02463 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Trre13g02463 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 267 291 - -
Trre13g02463 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Trre13g02463 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 299 322 - -
Trre13g02463 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Trre13g02463 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Trre13g02463 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Trre13g02463 484 MobiDBLite consensus disorder prediction 465 484 - -
Trre13g02463 484 Gene3D - 70 322 IPR015421 GO:0003824
Trre13g02463 484 SUPERFAMILY PLP-dependent transferases 16 432 IPR015424 -
Trre13g02463 484 Coils Coil 175 195 - -
Trre13g02463 484 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 273 286 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02463 Trre-Chr13 22130874 22134300 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02463 K20772 - gmx:100500423 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02463 13 22130874 22134300 Trre13g02463 13 22130874 22134300 ECH
Trre13g02463 13 22130874 22134300 Trre15g01111 15 8598409 8602471 PCT