Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00601 ATGGCAAACAATAACCATATCCACCCTCATGTCAAGTCCACCACTAATGGCGGTGCAGCCGCAGTTAAACCCTCATTCCCGGCCACAAAAGCACAAATCTACGGTGCCACTCGCCCGACCTACCGTCCACAAACCCACCACCGGCGCCGTAGCAACCGTAATTGGTGTTGCACCATTTGTTGTTGGGTTATACTCATCCTCATCTTCATCCTCATTCTCCTCGGTGTTGCTGGCACCGTCGTCTACCTCCTCTACCATCCCCAACGTCCTTCCTTTTCCGTCACCTCTCTTAAACTCACCTCTTCGGAGTTTGATCTCACTCTTTCCACCACCAACCCAAATGATAAAATCACATTTTCTTACCAACCTATCTCTGTTTCTCTTCTAGCCGGTGGACTCGACATTGGTGACGGTGTTATTCCATCGTTCGAGCATGGAACAAAGAATACTACAATGTTGAAAGCTTTGGTTGAGAGGAAAAGTGTTAAGAAGAAGTCATTGGAGTTGAAGATGAAGATGGAAACTAAGGTGGAGGCTAAGATGTGGGTTTTTAAGACACCACGTGTCGGAATAAGTGTTTTGTGCGCCGGCATTGATGTTGCTGGCGAGAAAGTGACGGCGGCCGGTGAGAACTGTGATGTGGATGTTAGGTTCAAGGGTTGA 663 0.4811 MANNNHIHPHVKSTTNGGAAAVKPSFPATKAQIYGATRPTYRPQTHHRRRSNRNWCCTICCWVILILIFILILLGVAGTVVYLLYHPQRPSFSVTSLKLTSSEFDLTLSTTNPNDKITFSYQPISVSLLAGGLDIGDGVIPSFEHGTKNTTMLKALVERKSVKKKSLELKMKMETKVEAKMWVFKTPRVGISVLCAGIDVAGEKVTAAGENCDVDVRFKG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00601 220 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g00601 220 Pfam Late embryogenesis abundant protein 107 193 IPR004864 -
Trre15g00601 220 SUPERFAMILY LEA14-like 70 157 - -
Trre15g00601 220 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 24 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00601 Trre-Chr15 4367796 4368874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00601 30 213 EF-hand Containing Proteins AT5G21130 27.358 6.51e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00601 - - mtr:25500453 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00601 15 4367796 4368874 Trre15g00601 15 4367796 4368874 ECH
Trre11g04627 11 58009696 58010466 Trre15g00601 15 4367796 4368874 PCT