Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04627 ATGACAGATCGTGTCTACCCTGCCGCCAAACCCACCATCAACGGCAACGGTAACGGTGTCACCGCCGCTAACCCATCTTTCCCAGCTACAAAAGCTCAACTCTACGGTGCCACCCGTCCTACCTACCGTCCTCAACCTCATCACCGCCGTAGCCGCCGCCGTTGCTGTTGCACTTTCTTTTTCTGGCTTCTCCTAATCATCCTCATCCTCCTCCTCATCGTTGGTGTCATCGGCACCGCTTTCTACCTAATCTACCGTCCTCACCGTCCTTCTTTCACCGTCACATCCCTTAAACTTTCATATCTCAATCTAACATCTTCTTCAACTCTTAACTCAAAATTCAACATCGACATCACAGCAAAAAACCCAAACAAAGACATAATCTTTGTTTACCAACCAACAACCATTTCAATTCTCTCCGGTGAAATAGATGTCGGTGATGGAACAATACCATCTTTCAACCATGGAAAAAAGAACACTACCCTTTTAAAAGCTTCGATTTTGAGCAACGGAGAATCACTAGAAACCGATTCTGCTTCACAGCTAAAGAAGAACATGAAGAGCAAAAATGGGTTACCGTTGAAAGTGAAATTGGATACGAAAGTGAAAGCGAAAATGGGTAAATTGAAAACACCTAACGTTGGAATTAGAGTTTCTTGCGACGGAATTAGAGTTCATTTACCCGTCGGTAAAAAGCCAGCAACGGCGTCAACTTCGAACGTTAAGTGTAACGTTGATGTGAGGTTTAAGATCTGGAAATGGACCGTTTAA 771 0.4423 MTDRVYPAAKPTINGNGNGVTAANPSFPATKAQLYGATRPTYRPQPHHRRSRRRCCCTFFFWLLLIILILLLIVGVIGTAFYLIYRPHRPSFTVTSLKLSYLNLTSSSTLNSKFNIDITAKNPNKDIIFVYQPTTISILSGEIDVGDGTIPSFNHGKKNTTLLKASILSNGESLETDSASQLKKNMKSKNGLPLKVKLDTKVKAKMGKLKTPNVGIRVSCDGIRVHLPVGKKPATASTSNVKCNVDVRFKIWKWTV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04627 256 Pfam Late embryogenesis abundant protein 118 220 IPR004864 -
Trre11g04627 256 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 23 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04627 Trre-Chr11 58009696 58010466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04627 48 244 EF-hand Containing Proteins AT5G21130 24.242 3.09e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04627 - - mtr:11421488 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04627 11 58009696 58010466 Trre15g00601 15 4367796 4368874 PCT