Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00562 ATGTCTAACATTGTTATTGTTTTCGACTTTGACAAAACTATCATTGATTGTGATAGTGATAACTGGTTGATTGATGAATTGGGTTTTACTGATTTGTTCAATCAACTTCTTCCCACAATGCCATGGAATTCTGTCATGGACAAAATGATGATGGAGTTTCATGCAAATGGTGTAACAATTGAAGAGATTGAGAAAGTTCTTCATAGGGTTCCAATTCATCACAGAATAGTACCTGCAATTAAAGCAGCTTATGCTTTAGGGTGTGATTTGAGGGCTGTGAGTGATGCTAATATGTTTTACATTGAAACTATTTTGAAGCATTTGGGAATAAGTGAATACTTTTCAGAGATTAACACTAATCCTGGTTATGTTAATGAAGAAGGAAGGGTTAGAATTTCACCTTACCATGACTTCAACAAATGTTCACATGGTTGCACTCTTTGCCCTCCAAACATGTGCAAGGGTTTAATCATTGATAGAATTCAAAATACAATTTCTGAAGTGGATAAGAAGAGGTTCATCTACCTTGGTGATGGTGCTGGTGATTATTGTCCTAGTTTGAGGCTTAGAGAAAGAGACTTTGTGATGCCAAGGAAGAATTTTCCAGTGTGGGATTTGATATGCAAAGATCCTTTACTTATTAAGGCTGAAATTAATGGTTGGAGTGATGGAGAAGAGTTGGAACAAGTATTGATGCACTTGATCAATAAAATTATGATGGAGGAACATGTTCAATTCATTTCAAGTGATTGCAAGTTGCAAACTCTATCTATTCCAGTGCTTGAATCATTGCCTAAAGCTCTTTCAGTTAGGCCATAG 819 0.359 MSNIVIVFDFDKTIIDCDSDNWLIDELGFTDLFNQLLPTMPWNSVMDKMMMEFHANGVTIEEIEKVLHRVPIHHRIVPAIKAAYALGCDLRAVSDANMFYIETILKHLGISEYFSEINTNPGYVNEEGRVRISPYHDFNKCSHGCTLCPPNMCKGLIIDRIQNTISEVDKKRFIYLGDGAGDYCPSLRLRERDFVMPRKNFPVWDLICKDPLLIKAEINGWSDGEELEQVLMHLINKIMMEEHVQFISSDCKLQTLSIPVLESLPKALSVRP 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00562 272 NCBIfam MtnX-like HAD-IB family phosphatase 3 199 IPR006384 GO:0016791
Trre15g00562 272 Pfam Putative Phosphatase 4 235 IPR016965 GO:0016791
Trre15g00562 272 SUPERFAMILY HAD-like 4 187 IPR036412 -
Trre15g00562 272 PIRSF PLP_phosphatas_PHOSPHO2 1 239 IPR016965 GO:0016791
Trre15g00562 272 NCBIfam HAD-IB family phosphatase 5 187 - -
Trre15g00562 272 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 243 IPR016965 GO:0016791
Trre15g00562 272 Gene3D - 1 188 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00562 Trre-Chr15 3983802 3985020 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00562 K13248 - gmx:100785878 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04652 11 58171509 58173482 Trre15g00562 15 3983802 3985020 PCT