Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00557 ATGAACGGTGGAGATGATGTTGCTGTAGCTCCGGAGGAACCATTGCAACCGTTGGAGTGGAAATTCTCCCAGGTTTTTGGTGAACGTGCGGCTGGTGAAGAAGTTCAAGAAGTGGACATAATTTCTGCTATCGAATTTGACAAGTCCGGTGATCATCTTGCTACCGGTGATCGTGGTGGTCGAGTAGTTCTCTTTGAACGGACAGATTCAAAAGATCATGGATCAAGAAGGGATTTGGAGAGTACAGACTATTCTAGTAGTCGGCATCCTGAGTTTCGCTATAAAACAGAATTTCAGAGTCATGAGCCCGAGTTTGATTATCTCAAGAGCTTGGAAATAGAAGAAAAAATTAACAAAATCAAATGGTGCCAAACAGCTAATGGAGCTGTATTCCTTCTATCTACAAATGACAAAACCATCAAGTTTTGGAAGGTTCAAGAAAAGAAGGTGAAGAAAATTTCTGACATGAATATTGACCCTTCAAAAGCAATGGGAAATGGATCTATTGCTAGTTCGAGTAATTCCAATAGTTCTAAGCCACATCTTGCAAATGGAGGATCTTCAGATAAATCATATAATTATCTGAGCAATGATTTCTCATTTCCACCAGGAGGCTTACCTTCGCTAAGATTACCCTCGGTAGCTAGCTATGAGACCAGTCTGTTGGCTCGATGTCGTAGAGTATATGCACATGCTCATGACTATCACATCAATTCTATTTCAAATAACAGTGATGGAGAAACTTTCATATCGGCTGATGATTTGCGAATAAATCTTTGGAACCTTGAAATTAGCAATCAAAGTTTTAATATTGTCGATGTAAAGCCTACAAATATGGAGGATCTGACTGAGGTTATAACATCAGCAGAATTTCACCCTACGCATTGTAATACACTGGCATATAGCAGTTCAAAGGGCTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCGTTATGTGACTCTCACGCCAAGCTATTTGAAGAACAGGAGGCCCCTGGCTCCAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGATATAAAATTTGCAAAGGAGGGAAGATATATACTCAGTCGTGATTACATGACTCTGAAGTTATGGGACATTAATATGGATTCCGGCCCAGTTGCTACATTCCGTGTTCACGAGCATTTAAGGCCAAGGCTATGTGATTTATACGAAAATGATTCAATTTTCGATAAGTTTGAGTGTTGTCTGAGTGGTGATGGATCGCGAGTTTCAACTGGTTCTTACAGCAATCTATTCCGCGTGTTTGGTTGTGCCCCGGGAAGTACAGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACACCGTCAAGGCCTTCTAGATCACTTGGAAACAGTTTAACAAGAGTTGTAAGACGCGGAGCTGAGAACACCGGTGTTGACGCAAATGGAAATTCTTTTGATTTTACAACAAAGTTGCTACACTTAGCATGGCACCCAAGTGAAAATTCAATTGCTTGTGCCGCTGCAAATAGCTTATACATGTACTATGCATGA 1545 0.4084 MNGGDDVAVAPEEPLQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSKDHGSRRDLESTDYSSSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDPSKAMGNGSIASSSNSNSSKPHLANGGSSDKSYNYLSNDFSFPPGGLPSLRLPSVASYETSLLARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKEGRYILSRDYMTLKLWDINMDSGPVATFRVHEHLRPRLCDLYENDSIFDKFECCLSGDGSRVSTGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSLTRVVRRGAENTGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00557 514 SMART WD40_4 272 312 IPR001680 GO:0005515
Trre15g00557 514 SMART WD40_4 222 261 IPR001680 GO:0005515
Trre15g00557 514 SMART WD40_4 31 66 IPR001680 GO:0005515
Trre15g00557 514 SMART WD40_4 104 144 IPR001680 GO:0005515
Trre15g00557 514 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 208 510 - -
Trre15g00557 514 SUPERFAMILY WD40 repeat-like 39 506 IPR036322 GO:0005515
Trre15g00557 514 PIRSF PPA2_B55 10 514 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 MobiDBLite consensus disorder prediction 441 461 - -
Trre15g00557 514 Gene3D - 18 194 IPR015943 GO:0005515
Trre15g00557 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 318 345 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 400 426 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 233 260 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 261 288 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 120 148 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 483 512 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 374 399 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 289 317 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 346 373 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 91 119 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 104 118 IPR018067 -
Trre15g00557 514 Gene3D - 215 512 IPR015943 GO:0005515
Trre15g00557 514 MobiDBLite consensus disorder prediction 164 185 - -
Trre15g00557 514 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 16 514 IPR000009 GO:0000159|GO:0019888
Trre15g00557 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 231 245 IPR018067 -
Trre15g00557 514 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 196 - -
Trre15g00557 514 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Trre15g00557 514 MobiDBLite consensus disorder prediction 156 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00557 Trre-Chr15 3937365 3943586 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00557 K04354 - gmx:100799449 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00557 15 3937365 3943586 Trre11g04657 11 58199222 58205370 ECH
Trre15g00557 15 3937365 3943586 Trre15g00557 15 3937365 3943586 ECH
Trre11g04657 11 58199222 58205370 Trre15g00557 15 3937365 3943586 PCT