Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04657 ATGAACGGTGCCGATGAGGTTGTTGCAGCTCCGGCGGGTCCACCGGTTCCTCTTGACTGGAAATTCTCTCAGGTGTTCGGTGAACGTACGGCTGGTGAAGAGGTTCAAGAAGTTGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTGGTTCTCTTTGAGAGGACAGATACAAAAGATCATGGCGAATCTAGAAGGGATTCAGAGAGGATGGACTATTCTCTCGGCAGGCACCCTGAATTCCGTTACAAAACAGAGTTTCAGAGTCACGAGCCTGAGTTTGACTACCTTAAGAGTTTGGAGATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAATCGCTAATGGTGCCCTTTTCCTTCTCTCGACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTGCTGAGATGAATGTCGACCCTTCAAAATCAATGGGAAATGGCAGTACTGCTAGTTCAAGTAATTCAATTAGTGCTAGGCCAAGCCTTGAAAATGGAGGATATCCAGATTCAGATAGATCGTTCAATTATCTAAGCTCCGACTTCTCATTTCCACCGGGAGGCATACCATCACTAAGATTACCCGTGGTAAGTAGCCACGAAACCAGCTTGGTGGCTCGATGTCGTAGAGTTTACGCTCATGCACATGATTATCATATCAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCCGATGATTTGCGAATAAATCTTTGGAATCTGGAAATAAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAACATGGAGGATCTGACAGAGGTTATTACATCTGCGGAATTCCACCCTACACATTGTAATACGTTGGCTTATAGCAGCTCAAAGGGTTCAATCCGTCTAATTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCAGGATCCCGATCATTTTTCACAGAGATTATTGCTTCTATATCTGACATAAAGTTTGGGAAGGATGGACGATACATACTAAGTCGTGATTACATGACTTTAAAGTTATGGGACATTAACATGGATTCAGGTCCGGTTGCAACTTACCAAGTTCATGAGTATCTAAGACCAAAGCTTTGTGATTTGTATGAAAACGATTCAATCTTTGATAAGTTCGAGTGTTGTCTGAGTGGTGACGGATTGCGAGTAGCAACTGGTTCTTACAGCAATTTATTCCGAGTTTTTGGCTGTGCTCCTGGAAGTACCGAAGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCGACCCCCTCAAGGCCGTCTAGATCACTGGGAAATAGTATAACAAGAGTTGTAAGACGGGGAGCAGAAAACCCTGGGGTTGATGCGAACGGGAATTCGTTTGATTTCACGACAAAGTTGTTGCACTTAGCATGGCATCCATCTGAAAATTCAATCGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCATAA 1554 0.4241 MNGADEVVAAPAGPPVPLDWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGESRRDSERMDYSLGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTNDKTIKFWKVQEKKVKKIAEMNVDPSKSMGNGSTASSSNSISARPSLENGGYPDSDRSFNYLSSDFSFPPGGIPSLRLPVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATYQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAENPGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04657 517 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 234 248 IPR018067 -
Trre11g04657 517 Gene3D - 324 513 IPR015943 GO:0005515
Trre11g04657 517 MobiDBLite consensus disorder prediction 157 185 - -
Trre11g04657 517 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 199 - -
Trre11g04657 517 SMART WD40_4 275 315 IPR001680 GO:0005515
Trre11g04657 517 SMART WD40_4 105 145 IPR001680 GO:0005515
Trre11g04657 517 SMART WD40_4 225 264 IPR001680 GO:0005515
Trre11g04657 517 SMART WD40_4 31 66 IPR001680 GO:0005515
Trre11g04657 517 SMART WD40_4 334 372 IPR001680 GO:0005515
Trre11g04657 517 PIRSF PPA2_B55 14 517 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Trre11g04657 517 SUPERFAMILY WD40 repeat-like 39 509 IPR036322 GO:0005515
Trre11g04657 517 MobiDBLite consensus disorder prediction 444 463 - -
Trre11g04657 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 292 320 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 349 376 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 486 515 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 264 291 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 321 348 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 377 402 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 236 263 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 403 429 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 Gene3D - 36 188 IPR015943 GO:0005515
Trre11g04657 517 MobiDBLite consensus disorder prediction 162 182 - -
Trre11g04657 517 Gene3D - 221 323 IPR015943 GO:0005515
Trre11g04657 517 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 17 517 IPR000009 GO:0000159|GO:0019888
Trre11g04657 517 Pfam WD domain, G-beta repeat 228 264 IPR001680 GO:0005515
Trre11g04657 517 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 211 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04657 Trre-Chr11 58199222 58205370 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04657 K04354 - gmx:100799449 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00557 15 3937365 3943586 Trre11g04657 11 58199222 58205370 ECH
Trre11g04657 11 58199222 58205370 Trre11g04657 11 58199222 58205370 ECH
Trre11g04657 11 58199222 58205370 Trre15g00557 15 3937365 3943586 PCT