Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00466 ATGCTATCGTTTACAGTTTCCCGTTTTCCTTCAACACAATCATTACCACTCAACAAAACATCACCATCAACAACAAACGCAACTTTTCCGATTAACCAACCACAAAACCCCAACACTCAACACAAGTTCAATTTCCAACAAACTGCTTCTTCTTCTTCTAGCGACAACAACAAAGCTGAAGACTTTCTCAGAGAAAAAACCAGTAACAGAGTTAACCCATTTGAGGGTGTTAATGATGGGGGTCTATTTGGAAGAAAGAAGAAAATGGGTAAGGAAAAAGTTTCTTGGGTTTGTAGCAATTGTGGGTATACTGCTGGACAATGGTGGGGTGTGTGTCGATCATGTGGTGTTTCTGGTACTATGAAAGAGTTCCATGAAGTCAAAGGTAGTGAGAGTAATGGTAAAGTTAGTGGCTTTTCTGTTATGGAGGATGGTTTGAGGTCTTGGCTTCCTGAGAAGAATGGTGAGTTGCGTCCTTTGAGATTGTCTGAGGTTAATAGGAGTGTTGATCATCTGCATTGGAGAATTCCTTTGTCTGGTCCTTTTGGAAATGAAGTTTCCAGAGTGCTTGGTGGTGGTCTTGTACCAGGTTCGTTGACTTTAGTTGGCGGGGATCCTGGTGTTGGGAAGAGTACTCTTTTGTTACAGATGGCTGGACTAATTGCCGAAGGGCTCAAAGATGGTGAAGCATCTCCAGTTGTGTATGTCTCTGGTGAAGAGAGTGTTGAGCAAATAAGTAACAGAGCAGACCGCCTAACAATTGGATCAGATATTTATTTATATTCAAGTACTGATATTGAGGACATATTAAAGAAAGTTCAGTATCTCTCTCCTCGGGCTCTAGTTGTTGATTCTGTACAAACTGTTTATTTGAAAGGAATAATGGGGAGTCCTGGAGGGATTATACAGGTGAAGGAATGTACTTCGGCTTTACTGCGATTTGCAAAGACAACAAACATCCCGGTTCTATTGATTGGACATGTGACAAAATCTGGAGATATAGCAGGACCTCGTGTCTTGGAGCATATCGTTGATGTTGTTTTGTATATGGAAGGTGAGAAGTACACTTCCTATCGTATGCTTCGAGCTGTGAAAAACAGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACCTTCAGGACTTGAGGCTGTTTCAAATGCCAGTGAAATGTTTCTTAGCGAGCAAGACATAAATTCAGACATTTTAGCTGGACTAGCTGTAGCTGTAATAATGGACGGGTCTCGAACATTTCTTATTGAAATTCAGGCACTTTGTCTTTCTGGTTCGACAGGATCAAGGCAGTTTAATGGTATCCAAGCAAATAGAGCTGATATGATCATATCGGTTCTTATCAAGCAAGCAGGACTTCGTCTCCAAGAACATGCTGTGTTTTTAAATGTTGTTAGCGGATTGGCAGTGACTGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTGCTTGGAGCTCCCTATTCCAAATGACATTGCATTCATTGGTGAAATTGGTCTTGGTGGCGAGCTTCGCATGGTTACTAGAATGGAAAAAAGGGTAAACACGGTGGCGAAATTGGGTTACAGAATGTGTATAGTACCAAAGGCAGCTGAAAAAAATTTGGGAACTAAAGGCTTAGAAAAGATAAAAATTGTTGGTTGCGGGAATCTGAAAGATGTTATCAACACTATATTTCCCAATGTCATGAGAAGAAGCAAGTGA 1734 0.4118 MLSFTVSRFPSTQSLPLNKTSPSTTNATFPINQPQNPNTQHKFNFQQTASSSSSDNNKAEDFLREKTSNRVNPFEGVNDGGLFGRKKKMGKEKVSWVCSNCGYTAGQWWGVCRSCGVSGTMKEFHEVKGSESNGKVSGFSVMEDGLRSWLPEKNGELRPLRLSEVNRSVDHLHWRIPLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQMAGLIAEGLKDGEASPVVYVSGEESVEQISNRADRLTIGSDIYLYSSTDIEDILKKVQYLSPRALVVDSVQTVYLKGIMGSPGGIIQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYTSYRMLRAVKNRFGSTDELGVFEMSPSGLEAVSNASEMFLSEQDINSDILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQFNGIQANRADMIISVLIKQAGLRLQEHAVFLNVVSGLAVTETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGGELRMVTRMEKRVNTVAKLGYRMCIVPKAAEKNLGTKGLEKIKIVGCGNLKDVINTIFPNVMRRSK 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00466 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 379 IPR027417 -
Trre15g00466 577 ProSiteProfiles RecA family profile 1. 175 328 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Trre15g00466 577 PANTHER DNA REPAIR PROTEIN RADA 25 571 - -
Trre15g00466 577 Gene3D - 185 392 IPR027417 -
Trre15g00466 577 NCBIfam DNA repair protein RadA 89 564 IPR004504 GO:0003684|GO:0005524|GO:0006281
Trre15g00466 577 Pfam AAA domain 189 332 - -
Trre15g00466 577 Pfam Subunit ChlI of Mg-chelatase 450 540 - -
Trre15g00466 577 FunFam DNA repair protein RadA 179 385 - -
Trre15g00466 577 FunFam DNA repair protein radA isogeny 403 572 - -
Trre15g00466 577 PRINTS DNA repair protein radA signature 284 308 - -
Trre15g00466 577 PRINTS DNA repair protein radA signature 98 122 - -
Trre15g00466 577 PRINTS DNA repair protein radA signature 358 384 - -
Trre15g00466 577 PRINTS DNA repair protein radA signature 433 456 - -
Trre15g00466 577 PRINTS DNA repair protein radA signature 188 216 - -
Trre15g00466 577 PRINTS DNA repair protein radA signature 323 351 - -
Trre15g00466 577 CDD RadA_SMS_N 96 387 - -
Trre15g00466 577 SMART AAA_5 196 354 IPR003593 GO:0016887
Trre15g00466 577 MobiDBLite consensus disorder prediction 1 65 - -
Trre15g00466 577 SUPERFAMILY Ribosomal protein S5 domain 2-like 365 569 IPR020568 -
Trre15g00466 577 MobiDBLite consensus disorder prediction 1 57 - -
Trre15g00466 577 Pfam Rubredoxin metal binding domain 96 123 IPR041166 -
Trre15g00466 577 Gene3D - 404 576 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00466 Trre-Chr15 3360597 3367260 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00466 K04485 - gmx:100794165 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00466 15 3360597 3367260 Trre15g00466 15 3360597 3367260 ECH
Trre11g04684 11 58330384 58338178 Trre15g00466 15 3360597 3367260 PCT