Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04684 ATGAAGTTCCTCAGAACAATCTTCGTCCACCATATCCACAAACGCCACTGTTTTCTCAACCCCAAATGCGTCTTTTCATCTCTAGTTTCATCCTCACCAACACCACCACCGGAGGATGATACAGAAACCCTACATTCCACCAATCCTAGAAACGAATCCACCAATAGCTGGAGTATCTACGGTAATGTAGTTGGGAAGCCGAGAATCAGCGATCACAGTGAAGAAAAAATCGAGGAGGAAAAACCAAATGAGAGTGAAAATGGGAGCATGATGAATTTGAAAAACAGAAATGTAATTAGGACGGCAACGATGCCGACAAAGAGGGGTACAGGGAAGGTGAAAACTCAGTGGGTTTGTAGCAATTGTGGGTATACTGCTGGACAATGGTGGGGTACATGTCCTTCTTGTACTATGGTTGGAACAATGAAGGAGTTTCATGAAGCAAAATTAAGTGATAGTGTTGATAATAATAAGGTTAGAAGTGGTATATCAGTTTCTGAAGATGCAATGGGAGCTTGGTTACCACAGAGAGGTGATCATTTGCGCCCTGTTAAACTGAATGAGGTTAACCGTGGATTCAACGAGAAGGGTTGGCGATTTCCTTTGTCTGGCCCTTTTGGAGATGAAGTGTCTATTGTGCTTGGTGGTGGTCTTGTGCCAGGCTCTTTGAATTTATTTAGTGGTGATCCTGGTGTTGGGAAGAGTACACTGTTGTTGCAGATGGCAGCATTGGTAGCAGATGGATGCAATGGCAATGACGGTGAGGTCCTTCCAGTTGTATACGTTTCTGGTGAAGAGAGCCTTCAGCAAATTGCTCACAGAGCAGATCGCCTTGGGATTAAATCTGATATTTATTTGTATTCAAGTACTGATATTGAGGACATATTAAGGATAGCTCAGTCTCTCCCCATTCGAGCTCTGGTTGTTGATTCAATACAAACTGTTTATTTGAAAGGAATAGCAGGAAGTGCTGGAGGAGTTACGCAGGTGAAAGAATGTACTTCGGCTTTGATGCGATTTGCTAAAACGACTAACATCCCAGTACTTTTGATTGGGCATGTGACAAAATCTGGAGACATAGCCGGGCCTCGTGTTCTGGAGCATATTGTGGATGTTGTCTTGTACTTAGAAGGTGAGAGGTTCACTTCATACCGAATGCTTCGTGCTGTGAAAAATCGGTTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCAGAATCAGGATTTAAGGCTGTTTCCAATGCCACTGAAATGTTTCTCACTGAACAAGACCCTGATTCAGATGTTTTAGTTGGCTTAGCTTTTACTGTAATAATGGATGGTTCAAGAACTTTCATAATTGAAGTTCAGGCACTCTGCCTTTCAGAAGGGTCAACTTCAAGAGTAATTAATGGAATTGAAACAAATAGAGCTAACATGATCAAATGTGTTCTTATAAAGCAAGCAGGTCTTAATATCCCAGTAAATTCTGTGCATTTGAATGTCGTTAGTGGATTGACATTGTCCGAGACTGCTGGAGATCTAGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTACCCTATTCCAAAGGGCATTGCATTCATTGGTGAAATTGGCCTTAGCGGAGAGCTTCGCACGGTTCCTAGAATCGACAAAAGAGTCCACGCATTGTCAAAGTTGGGTTACAAAACCTGTGTGTTGCCAAAGCAAGCTGTAAAAGCTTTAGGAACTGAAGGTCTAGAAAACATTGAAATAGTAGGTTGCAAGAATCTGAAGGAGTTTATTAACGTAGTATTCAGTAGATAA 1794 0.4203 MKFLRTIFVHHIHKRHCFLNPKCVFSSLVSSSPTPPPEDDTETLHSTNPRNESTNSWSIYGNVVGKPRISDHSEEKIEEEKPNESENGSMMNLKNRNVIRTATMPTKRGTGKVKTQWVCSNCGYTAGQWWGTCPSCTMVGTMKEFHEAKLSDSVDNNKVRSGISVSEDAMGAWLPQRGDHLRPVKLNEVNRGFNEKGWRFPLSGPFGDEVSIVLGGGLVPGSLNLFSGDPGVGKSTLLLQMAALVADGCNGNDGEVLPVVYVSGEESLQQIAHRADRLGIKSDIYLYSSTDIEDILRIAQSLPIRALVVDSIQTVYLKGIAGSAGGVTQVKECTSALMRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYLEGERFTSYRMLRAVKNRFGSTDELGVFEMSESGFKAVSNATEMFLTEQDPDSDVLVGLAFTVIMDGSRTFIIEVQALCLSEGSTSRVINGIETNRANMIKCVLIKQAGLNIPVNSVHLNVVSGLTLSETAGDLAIAAAICSSFLEYPIPKGIAFIGEIGLSGELRTVPRIDKRVHALSKLGYKTCVLPKQAVKALGTEGLENIEIVGCKNLKEFINVVFSR 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04684 597 SUPERFAMILY Ribosomal protein S5 domain 2-like 391 595 IPR020568 -
Trre11g04684 597 Gene3D - 420 597 IPR014721 -
Trre11g04684 597 ProSiteProfiles RecA family profile 1. 199 354 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Trre11g04684 597 CDD RadA_SMS_N 117 413 - -
Trre11g04684 597 PANTHER DNA REPAIR PROTEIN RADA 47 596 - -
Trre11g04684 597 SMART AAA_5 220 380 IPR003593 GO:0016887
Trre11g04684 597 Pfam Rubredoxin metal binding domain 117 144 IPR041166 -
Trre11g04684 597 NCBIfam DNA repair protein RadA 112 588 IPR004504 GO:0003684|GO:0005524|GO:0006281
Trre11g04684 597 FunFam DNA repair protein radA isogeny 429 597 - -
Trre11g04684 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 405 IPR027417 -
Trre11g04684 597 Gene3D - 211 411 IPR027417 -
Trre11g04684 597 PRINTS DNA repair protein radA signature 459 482 - -
Trre11g04684 597 PRINTS DNA repair protein radA signature 119 143 - -
Trre11g04684 597 PRINTS DNA repair protein radA signature 212 240 - -
Trre11g04684 597 PRINTS DNA repair protein radA signature 384 410 - -
Trre11g04684 597 PRINTS DNA repair protein radA signature 310 334 - -
Trre11g04684 597 PRINTS DNA repair protein radA signature 349 377 - -
Trre11g04684 597 MobiDBLite consensus disorder prediction 29 61 - -
Trre11g04684 597 MobiDBLite consensus disorder prediction 68 85 - -
Trre11g04684 597 Pfam Subunit ChlI of Mg-chelatase 479 566 - -
Trre11g04684 597 MobiDBLite consensus disorder prediction 29 90 - -
Trre11g04684 597 Pfam AAA domain 215 358 - -
Trre11g04684 597 FunFam DNA repair protein RadA 204 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04684 Trre-Chr11 58330384 58338178 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04684 K04485 - gmx:100791181 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04684 11 58330384 58338178 Trre11g04684 11 58330384 58338178 ECH
Trre11g04684 11 58330384 58338178 Trre15g00466 15 3360597 3367260 PCT