Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00347 ATGGGTTGTTTTGATGAGGGACATTTCAATGGTGAACTTGAAAATGGTGTGAGTATGTGTAGTGAGGTTGAAGATGAGGCAAATACAACTGCTATTGAAGATGCTGTGAAGGTTCTTTTGTTGGGTCTTGGTGAAGATATTAATAGGGAAGGTCTTAAAAAGACACCTATTCGTGTTGCAAAAGCTCTACGTGAAGGAACTAGAGGTTATAGACAAAAAGTGAAGGACATTGTTGAAGGTGCTTTATTTCCTGAAGCTGGTCTAGAGAATAATAAAATTGGACATGCTGGTGGTGCAGGCGGACTTGTGATTGTCCGAGACATTGACCTATATTCCTATTGTGAATCTTGCATGCTACCTTTCCAGGTCAAATGTCATGTCGGTTATGTCCCTTCTGGCCAAAGAGTTGTTGGATTAAGCAAGCTCTCTCGTGTTGCTGAAGTATTTGCTAAACGACTTCAAGAGCCTCAGCGTCTAGCAGACGAGGTGTGTTTGGCTTTGCAACAGGGAATAAGACCCGCAGGCGTAGCTGTCGTACTTCAGTGTACACATATTCACTTTCCAGACATAGAATCAATCTTTCTAGAATCAAACCAGAAAGGTTGGGTGAAAATACATGTTTCCTCAGGTTCTGGTGTCTTTGAAAACAAAAACGCAGATGTATGGGCTGATTTCTTTTACCTTATTAAATCTAGAGATGTTGATAAGGAAAAAATTCATGTTCGTGGTTCGTCTGACCAATGCTGGTGTCCGTCGCTCTCGGCTCTTTCCACTAAAGTTTCCTCCAAAATCGGACCGATCAATCCGGCAATGGTCACTGCAGTATCATCAATTCTAAATTCATTGGGAGAAGATTCAGTTAGGAAGGAGCTTGCAGGGACTCCTAATCGATTCGTGAAATGGCTGTTAAATTTCCAAAGCATTGACATGGATGTGAAGCTGAATGGCTCCATTTGTGGGGGGATAAAACCTTTGAATGCCGCTTGCAAGGTGGTAAATAACATCGACAAACAAATATACTCCGAATTGAACTTGCCGTTTTGGTCTCAATGTGAGCATCATATACTTCCATTCCACGGTGTTGTTCACATAGGATACTTCCTTTCAGAAGGATTCAATCCAATTGGAAAATCACTTTTACAGTCAATAGTTCATTTTTATGGTTTCAAGCTCCAAGTTCAGGAAAGGCTTACAAAACAGATAGCAGAAACAATTTCACCACTTTTAGGTGGAAATGTAATAGTAGTTGTAGAGGCAAGTCACACATGTATGATTTCTCGGGGAATTGAGAAGTTTGGAAGTAGTACAGCTACAATTGCTGTATTAGGATGCTTTTCAACTGACCTTGCTTCTAGGACCTCATTCTTGCAAAGTATTGCAAATGCTACATCTTCTGGAGGGCAATGA 1407 0.4087 MGCFDEGHFNGELENGVSMCSEVEDEANTTAIEDAVKVLLLGLGEDINREGLKKTPIRVAKALREGTRGYRQKVKDIVEGALFPEAGLENNKIGHAGGAGGLVIVRDIDLYSYCESCMLPFQVKCHVGYVPSGQRVVGLSKLSRVAEVFAKRLQEPQRLADEVCLALQQGIRPAGVAVVLQCTHIHFPDIESIFLESNQKGWVKIHVSSGSGVFENKNADVWADFFYLIKSRDVDKEKIHVRGSSDQCWCPSLSALSTKVSSKIGPINPAMVTAVSSILNSLGEDSVRKELAGTPNRFVKWLLNFQSIDMDVKLNGSICGGIKPLNAACKVVNNIDKQIYSELNLPFWSQCEHHILPFHGVVHIGYFLSEGFNPIGKSLLQSIVHFYGFKLQVQERLTKQIAETISPLLGGNVIVVVEASHTCMISRGIEKFGSSTATIAVLGCFSTDLASRTSFLQSIANATSSGGQ 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00347 468 Pfam GTP cyclohydrolase I 273 459 IPR020602 -
Trre15g00347 468 Pfam GTP cyclohydrolase I 32 185 IPR020602 -
Trre15g00347 468 PANTHER GTP CYCLOHYDROLASE I 11 185 IPR001474 GO:0003934|GO:0046654
Trre15g00347 468 Gene3D - 332 462 IPR043133 -
Trre15g00347 468 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 267 459 - -
Trre15g00347 468 Gene3D - 267 313 IPR043134 -
Trre15g00347 468 Gene3D - 20 77 IPR043134 -
Trre15g00347 468 FunFam GTP cyclohydrolase 1 330 461 - -
Trre15g00347 468 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 5 230 - -
Trre15g00347 468 FunFam GTP cyclohydrolase 1 29 78 - -
Trre15g00347 468 Gene3D - 96 233 IPR043133 -
Trre15g00347 468 FunFam GTP cyclohydrolase 1 97 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00347 Trre-Chr15 2393259 2395252 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00347 K01495 - gmx:100780537 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01089 13 8659736 8662698 Trre15g00347 15 2393259 2395252 PCT