Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01089 ATGGGCTGTTTAGATGATGGGCGTTTCAATGTTGAGCTTGAAAATGGAATGAAGAATTGTTGTGGTGAAAATGGAAAAGATGGTGCTGTTATTGAAGATGCTGTTAAGGTTTTGTTGATGGGTCTTGGTGAAGATATTAATAGGGAAGGTATTAGAAAGACACCACTTCGTGTTGCCAAAGCCCTTCGTGAAGGAACAAGAGGTTACAGGCAAAAGGTGAAGGACATTGTTCAAGGTGCTTTATTCCCTGAAGCTGGTCTCGATAATAGAGTTGGTCATGCTGGTGGAGCAGGTGGACTTGTGATTGTCCGAGATATTGACTTGTTTTCATATTGTGAGTCATGCATGCTTCCATTCCAGGTCAAGTGTCATGTGGGTTATGTTCCATCCGGTGAAAGAGTTGTCGGTTTAAGCAAACTCTCTCGTGTTGCTGATGTATTTGCAAAACGACTCCAAGAGCCTCAACGTCTCGCAAATGAAGTTTGTTCTGCTTTGCATCAAGGAATAAAGCCAGCAGGTGTTGCCGTCATATTTCAATGTACACACATCCACTTTCCAGACTTAGAATCAGTCTTTCTCGATTCAAACCACCAAGGATTGGTTAAGATACTTGTTTCTGCTGGTTCCGGAGTTTTTGAAAACAAAAATGCAGACGAATGGGCTGATTTCTTTAGTCTCCTCAAATTTAGAGGCATCAGTTTGGAAAAAATCCACTTTAGAGGATCATCTGACTTGTCCTGGTGTCCTTCTCAATCGGCCAAAGTTTCCTCCAAAATCGGAACCATCAACCCTGCAATGGTCACTGCAGTTGCTTCAATTATCAAATCTTTGGGAGAAGATCCACTGAGGAAGGAGCTTAGAGGGACTCCAAGTAGATTTGTGAAATGGCTGATGAACTTTCAGAACAGCAACTTTGACATGAAGTTAAACGGTTTTCTCAATGGTGGAATAGATTCTTTAACCGCAAATAAGGAGGTTGACATGAACAATAAAAAAATATGCTCTGAGCTGAACTTAACATTTTGGTCACAATGTGAACACCATTTACTTCCATTTCATGGTGTTGTTCACATAGGGTACATCTTATCAGATGGATTTAGTCCTATCGGAAAATCTCTTTTACAATCGATAGTACATTTTTACGGTTTCAAGCTTCAAGTTCAGGAGAGGCTTACTAGACAGATAGCTGAGACAATTTCACCGCTGATCGGCGGAGATGTGATAGTAGTTGTAGAAGCAAGTCACACATGTATGATTTCTAGAGGTATTGAGAAGTTTGGAAGTAGTACTGCCACTATTGCTGTTTTAGGACAATTTTCGACCGACCTTGCCACAAGGGCTTCCTTCTTGCAGGGTATTCCATGTCCTACATCTTCAGAGCATTGA 1386 0.412 MGCLDDGRFNVELENGMKNCCGENGKDGAVIEDAVKVLLMGLGEDINREGIRKTPLRVAKALREGTRGYRQKVKDIVQGALFPEAGLDNRVGHAGGAGGLVIVRDIDLFSYCESCMLPFQVKCHVGYVPSGERVVGLSKLSRVADVFAKRLQEPQRLANEVCSALHQGIKPAGVAVIFQCTHIHFPDLESVFLDSNHQGLVKILVSAGSGVFENKNADEWADFFSLLKFRGISLEKIHFRGSSDLSWCPSQSAKVSSKIGTINPAMVTAVASIIKSLGEDPLRKELRGTPSRFVKWLMNFQNSNFDMKLNGFLNGGIDSLTANKEVDMNNKKICSELNLTFWSQCEHHLLPFHGVVHIGYILSDGFSPIGKSLLQSIVHFYGFKLQVQERLTRQIAETISPLIGGDVIVVVEASHTCMISRGIEKFGSSTATIAVLGQFSTDLATRASFLQGIPCPTSSEH 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01089 461 PANTHER GTP CYCLOHYDROLASE I 15 183 IPR001474 GO:0003934|GO:0046654
Trre13g01089 461 Gene3D - 94 230 IPR043133 -
Trre13g01089 461 Gene3D - 322 454 IPR043133 -
Trre13g01089 461 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 21 228 - -
Trre13g01089 461 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 264 453 - -
Trre13g01089 461 Pfam GTP cyclohydrolase I 268 453 IPR020602 -
Trre13g01089 461 Pfam GTP cyclohydrolase I 31 183 IPR020602 -
Trre13g01089 461 Gene3D - 27 77 IPR043134 -
Trre13g01089 461 FunFam GTP cyclohydrolase 1 324 455 - -
Trre13g01089 461 FunFam GTP cyclohydrolase 1 95 230 - -
Trre13g01089 461 Gene3D - 261 304 IPR043134 -
Trre13g01089 461 FunFam GTP cyclohydrolase I 1 260 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01089 Trre-Chr13 8659736 8662698 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01089 K01495 - gmx:100816351 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01089 13 8659736 8662698 Trre15g00347 15 2393259 2395252 PCT