Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00296 ATGTCTGGTCACTGGGGAATTCTTGTTTCAGATCCATGTCTTCAGAATCAGTTCACACAAGTTGAACTTAGAAGCTTAAAAAACCAATTCATGAGCATGAGGAGGGAAAGTGGGAAGCTTGTGATTGCAGATTTAGCTTCAAAGATGTCAAGATTGAAAGTTGTGGGAGAAAATCTGAGTGAAGAGGAGAGAGCTTCATGTGTTCATGATTTGTATCAGAACACTGATGAGGAGGTTGATTTTGAATTGTTTCTCAAGGTTTACTTGAAACTACAAACATTTGCAAATTCTAGAACAGGAAGTAGTCCAAAGAATTCATCGGCATTCTTAAAAGCAGCTACTACTACATTGCTTCACACCATAAGTGAATCCGAGAAATCATCATATGTTACACATATAAATCACTATCTTTCACAAGATGAGTTCCTCAACAAGTACCTTCCTATTGATCCTTCAACCAACGAGCTCTTCGAAATTGCAAAAGATGGCGTTCTTCTTTGCAAGCTTATCAATGTTGCGGTTCCCGGGACTATTGATGAACGTGCGATCAATACGAAAAGATTACTCAACCCATGGGAAAGGAATGAAAATCACACACTTTGTCTTAACTCTGCTAAAGCCATTGGATGTACTGTAGTAAACATTGGCACACAAGACTTCATTGAAGGAAGGCGTCATCTGGTACTTGGAGTGATATCACAGATTATTAAGATACAACTATTGGCAGACCTCAATCTAAAGAAAACTCCTCAGCTGCTTGAGTTGCTTGATGATAGTAAGGATATGGAAGAGTTGATGAATCTACCACCAGAAAAGATTTTGTTAAGGTGGATGAATTTCCATTTGAAGAAATCAGAGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTCAAGGATGCTGAGGCTTATGCACATCTTCTAAATGTTCTTGCACCAGAATACACTAATCCTTCCACATTGGCCGTAAAAAATCCCTTCGAAAGAGCAACGTTAGTTCTTGAACATTCTGATAAAATGGGCTGCAAGCGATACCTAACTGCAAGAGACATTGCGGAAGGATCTCCAAATCTTAATCTTGCCTTTGTTGCACATATTTTCCAGCATAGGAATGGACTTACAGACCAGACAAAGCAGATTTCTCTCCTTCAAGCATTGCCTGATGACACCGAAGACTCTAGAGAAGAGAGAGCATTTCGCCTTTGGATTAATAGCCTTGGAAATTCAGCATATATCAACAATGTCTTTGAGGATCTCAGAAACGGATGGATTCTCTTAGAGACTCTTGATAAGGTCTCAGCAGGAATTGTGAATTGGAAGATTGCAAACAAGCCTCCAATTAAGATGCCATTTAAGAAAGTTGAGAATTGCAACCAAGTTGTGAAAATAGGGAAACAGCTTAAATTCTCTTTGGTAAATGTTGCTGGTAATGACATCATGCAGGGAAATAAAAAGCTAATACTAGCTTATCTGTGGCAATTGATGCGATACAACATTCTTCAACTTCTAAAGAACTTGCGATTTCACGCTCGCGGGAAGGAAATAACTGATGCTGATATTTTGGAATGGGCCAACAGCAAAGTTAGCAGCACAGGAAGTCAAAACAGCATGAACAGTTTTAAGGACAAAAGTTTATCAGATGGAATATTTTTCCTCGAGCTTCTTAGTTCTGTGCAGCCTAGAGCTGTAAATTGGGGACTTGTAACAAAAGGAGTAACTGATGAAGAGAAAAAGATGAATGCTAGCTACATCATCAGTATTGCAAGAAAGCTAGGCTGTTCTATATTCCTGCTTCCTGAAGACATCACTGAGGTGAATCAAAAGATGATCCTTACTCTAACAGCTAGTATAATGTCTTGGTTTCTAAAACATCCTCATGAAGAAAGAACATTGGGAACTTCAGATAGTGAGAGTGGAAGTCAATTGGAGACTATATCAAATTCAACACTAGATGACACTTCTTCTGATTCATCTGTGGATGAAAATGGAAACATGTAA 1998 0.3869 MSGHWGILVSDPCLQNQFTQVELRSLKNQFMSMRRESGKLVIADLASKMSRLKVVGENLSEEERASCVHDLYQNTDEEVDFELFLKVYLKLQTFANSRTGSSPKNSSAFLKAATTTLLHTISESEKSSYVTHINHYLSQDEFLNKYLPIDPSTNELFEIAKDGVLLCKLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLELLDDSKDMEELMNLPPEKILLRWMNFHLKKSEYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAVKNPFERATLVLEHSDKMGCKRYLTARDIAEGSPNLNLAFVAHIFQHRNGLTDQTKQISLLQALPDDTEDSREERAFRLWINSLGNSAYINNVFEDLRNGWILLETLDKVSAGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLVNVAGNDIMQGNKKLILAYLWQLMRYNILQLLKNLRFHARGKEITDADILEWANSKVSSTGSQNSMNSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDEEKKMNASYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMSWFLKHPHEERTLGTSDSESGSQLETISNSTLDDTSSDSSVDENGNM 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00296 665 FunFam Fimbrin-2 isoform A 246 374 - -
Trre15g00296 665 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Trre15g00296 665 PANTHER FIMBRIN/PLASTIN 4 624 IPR039959 GO:0051015|GO:0051017
Trre15g00296 665 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
Trre15g00296 665 SMART ch_5 125 238 IPR001715 GO:0005515
Trre15g00296 665 SMART ch_5 395 497 IPR001715 GO:0005515
Trre15g00296 665 SMART ch_5 516 620 IPR001715 GO:0005515
Trre15g00296 665 SMART ch_5 270 369 IPR001715 GO:0005515
Trre15g00296 665 ProSiteProfiles Calponin homology (CH) domain profile. 393 499 IPR001715 GO:0005515
Trre15g00296 665 CDD CH_AtFIM_like_rpt1 124 239 - -
Trre15g00296 665 FunFam Fimbrin-1 isoform A 507 619 - -
Trre15g00296 665 CDD CH_AtFIM_like_rpt3 391 504 - -
Trre15g00296 665 FunFam Fimbrin-2 like 389 506 - -
Trre15g00296 665 ProSiteProfiles Calponin homology (CH) domain profile. 514 622 IPR001715 GO:0005515
Trre15g00296 665 MobiDBLite consensus disorder prediction 634 665 - -
Trre15g00296 665 FunFam Fimbrin-2 like 119 245 - -
Trre15g00296 665 Pfam Calponin homology (CH) domain 269 370 IPR001715 GO:0005515
Trre15g00296 665 Pfam Calponin homology (CH) domain 144 237 IPR001715 GO:0005515
Trre15g00296 665 Pfam Calponin homology (CH) domain 517 621 IPR001715 GO:0005515
Trre15g00296 665 Pfam Calponin homology (CH) domain 395 498 IPR001715 GO:0005515
Trre15g00296 665 SUPERFAMILY Calponin-homology domain, CH-domain 121 618 IPR036872 -
Trre15g00296 665 Gene3D - 246 374 IPR036872 -
Trre15g00296 665 Gene3D - 507 619 IPR036872 -
Trre15g00296 665 Gene3D - 389 506 IPR036872 -
Trre15g00296 665 Gene3D - 119 245 IPR036872 -
Trre15g00296 665 MobiDBLite consensus disorder prediction 629 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00296 Trre-Chr15 2022879 2028553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00296 1 624 EF-hand Containing Proteins AT5G55400 64.217 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00296 - K17275 gmx:100799696 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01051 13 8396954 8402065 Trre15g00296 15 2022879 2028553 PCT