Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01051 ATGACTAGTCATTGGGGTATTCTAGTTTCAGATCCATGTCTTCAAAACCAGTTCACACAAGTTGAACTTCGAAGCTTAAAATCACAATTTATGAGCATGAGGAGAGAGAGTGGGAGGCTTAACATTGGAGACTTGGCTTCAAAGATGTCAAGGTTGAAAGTTGTTGGAGAAAATCTGAGTGAAGAAGAAAGAGATTCTTATATCCATGATTTGTATCAGAACTCAGATGAAGATGTTGATTTTGAATTGTTTCTCAAGGTTTACTTGAAACTGCAAACATTTGCAAGTTCTAGAACAGGAAACAATAATGCAAAAAACTCATCAGCATTCCTCAAAGTTGCTACTACCACATTGCTTCACACAATAAGTGAATCTGAGAAAGCATCATATGTTACACATATAAATAACTATCTTGCTGAAGATGAATTCCTCAAGAAATACCTTCCTCTTGATCCTTCAACCAATGATCTCTTCGAAATCGCAAAAGACGGTGTTCTTCTTTGTAAGCTTATTAATGTGGCAGTTCCGACGACCATCGATGAACGCACAATCAATACAAAAAGATTACTTAATCCATGGGAAAGGAATGAAAACCACACACTATGCCTCAACTCTGCTAAAGCAATTGGATGTACAGTTGTTAACATTGGCACTCAAGACTTAATTGAAGGAAGGCGTCATTTGGTACTCGGATTGATTTCACAGATTATTAAGATACAATTATTGGAGAATTTGAACCTAAAGAAAACTCCTCAACTTTTGGAGTTGGTTGATGATAGTAAGGATATGGAAGAGTTGATGAGTCTACCACCAGAAAAAATCTTGTTGAGATGGATGAATTTCCATTTGAAGAAAACAGAATATAAGAAGATTGTCACAAATTTCTCCTCTGATGTTAAGGATGCAGAAGCTTATGCTCACCTTCTAAATGTTCTTGCACCGGAATACACTAATCCATCCACATTAGCCGTGAAAAACCCTTTTGAAAGAGCAAAACTGGTTCTTGAACATGCGGAAAAGATGGGTTGCAAACGATACTTAACTGCAAGAGATATAATTGAAGGTTCACCAAATCTTAACCTTGCTTTTGTTGCACATATTTTCCAAATCAGGAATGGACTTTCAACTCTAGCAAAACAAAATTCTCTTCTTGAATCATTGCTTGATGATACTCAAGATTCAAGAGAAGAGAGAGTTTTTCGCCTTTGGATTAATAGCCTTGGCAATTCAACATATATCAACAATGTCTTTGAGGATGTCAGAAACGGGTGGGTACTTTTAGAGACACTTGACAAGGTGTCACCAGGAATTGTTAATTGGAAGATTGCAAACAAGCCTCCTATTAAAATGCCATTTAAAAAAGTTGAGAATTGTAACCAAGTTGTGAAAATTGGGAAACAACTTAAGTTTTCCTTGGTAAATATTGCTGGAAATGATATTGTGCAGGGATACAAAAAATTAATACTAGCATACTTGTGGCAATTGATGAGATGCAATATCCTACAACTTCTAAAGAACTTGAGATTTCACTCTCATGGGAAAGAAATAATTGATGCTGATATTCTTCAATGGGCAAACACCAAAGTTGGAAGCTCAGGAAGCCAAAGCCATATATATAGTTTCAAGGATAAAAGTTTATCGGATGGAATTTTTTTCTTGGAGCTCCTTAGTTCTGTGCAACCTAGAGCTGTGAATTGGGGTCTTGTAACAAAGGGAGTAACCGATCAGGAGAAAATGATGAATGCGACATACATTATCAGTATTGCAAGAAAGCTTGGATGTTCAATATTCTTGCTACCTGAAGACATCACCGAGGTAAATCAGAAGATGATACTTACATTAACAGCAAGTATAATGTATTGGTTTTTAAAACATCCTGTTGTTGAAGAAAGAACAAGTTCAGACAGTGAGAGTCAAGTGGAAACTATATCAAATTCAACACTTGATGATTCTGCTTCTGATTTTTCTGCAGAAGAGAACATGTAA 1986 0.361 MTSHWGILVSDPCLQNQFTQVELRSLKSQFMSMRRESGRLNIGDLASKMSRLKVVGENLSEEERDSYIHDLYQNSDEDVDFELFLKVYLKLQTFASSRTGNNNAKNSSAFLKVATTTLLHTISESEKASYVTHINNYLAEDEFLKKYLPLDPSTNDLFEIAKDGVLLCKLINVAVPTTIDERTINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEGRRHLVLGLISQIIKIQLLENLNLKKTPQLLELVDDSKDMEELMSLPPEKILLRWMNFHLKKTEYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAVKNPFERAKLVLEHAEKMGCKRYLTARDIIEGSPNLNLAFVAHIFQIRNGLSTLAKQNSLLESLLDDTQDSREERVFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLVNIAGNDIVQGYKKLILAYLWQLMRCNILQLLKNLRFHSHGKEIIDADILQWANTKVGSSGSQSHIYSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDQEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPVVEERTSSDSESQVETISNSTLDDSASDFSAEENM 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01051 661 CDD CH_AtFIM_like_rpt1 125 240 - -
Trre13g01051 661 ProSitePatterns Actinin-type actin-binding domain signature 2. 213 237 IPR001589 -
Trre13g01051 661 CDD CH_AtFIM_like_rpt3 392 505 - -
Trre13g01051 661 Gene3D - 390 507 IPR036872 -
Trre13g01051 661 MobiDBLite consensus disorder prediction 637 661 - -
Trre13g01051 661 ProSiteProfiles Calponin homology (CH) domain profile. 124 241 IPR001715 GO:0005515
Trre13g01051 661 FunFam Fimbrin-1 isoform A 508 620 - -
Trre13g01051 661 SUPERFAMILY Calponin-homology domain, CH-domain 122 620 IPR036872 -
Trre13g01051 661 Pfam Calponin homology (CH) domain 396 498 IPR001715 GO:0005515
Trre13g01051 661 Pfam Calponin homology (CH) domain 270 371 IPR001715 GO:0005515
Trre13g01051 661 Pfam Calponin homology (CH) domain 519 622 IPR001715 GO:0005515
Trre13g01051 661 Pfam Calponin homology (CH) domain 147 239 IPR001715 GO:0005515
Trre13g01051 661 PANTHER FIMBRIN/PLASTIN 5 624 IPR039959 GO:0051015|GO:0051017
Trre13g01051 661 Gene3D - 508 620 IPR036872 -
Trre13g01051 661 ProSiteProfiles Calponin homology (CH) domain profile. 515 623 IPR001715 GO:0005515
Trre13g01051 661 ProSiteProfiles Calponin homology (CH) domain profile. 394 500 IPR001715 GO:0005515
Trre13g01051 661 SMART ch_5 271 370 IPR001715 GO:0005515
Trre13g01051 661 SMART ch_5 126 239 IPR001715 GO:0005515
Trre13g01051 661 SMART ch_5 517 621 IPR001715 GO:0005515
Trre13g01051 661 SMART ch_5 396 498 IPR001715 GO:0005515
Trre13g01051 661 MobiDBLite consensus disorder prediction 633 661 - -
Trre13g01051 661 ProSitePatterns Actinin-type actin-binding domain signature 1. 396 405 IPR001589 -
Trre13g01051 661 FunFam Fimbrin-2 isoform A 247 375 - -
Trre13g01051 661 FunFam Fimbrin-2 like 390 507 - -
Trre13g01051 661 Gene3D - 120 246 IPR036872 -
Trre13g01051 661 Gene3D - 247 375 IPR036872 -
Trre13g01051 661 FunFam Fimbrin-2 like 120 246 - -
Trre13g01051 661 SUPERFAMILY EF-hand 16 95 IPR011992 -
Trre13g01051 661 ProSiteProfiles Calponin homology (CH) domain profile. 269 372 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01051 Trre-Chr13 8396954 8402065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01051 1 625 EF-hand Containing Proteins AT5G55400 65.550 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01051 - - gmx:100805133 1172.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01051 13 8396954 8402065 Trre15g00296 15 2022879 2028553 PCT