Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00102 ATGGCGACAATTAACCCTTTTGATTTGTTGGGTGATGATGCTGAAGACCCTTCACAGTTGATTGCTGCTGAACAACTGAAAGCGGCGGCTGCAGCGGCGGCGGCCCCCAAAAAGGGGATTGACCAAGGCAAGCAGGCTGCTCCTAAGAAGCCAGCTCAGTTGCCTTCCAAACCACTTCCTCCTTCTCAGGCTGTTAGGGAGGCCAGAAATGAGCCTTCTCGTGGTGGCCGTGGAGGCGGACGTGGCTTTGGACGTGGTCGTGGCGGCGGCGGCTTTGGTCGTGACTTTTCCAACGATGATAACACATTGCCTGCTCCTCCTGCTAATCAGGGCTCTTTCGAAGGAGATTCTGGGAATCCCTCTGAAAGACGAGGTTATGGTGCACCTCGTGCTCCTTATCGTGCTGGTGGCGAGCGTCGTCGTGGAGGTTTCAGCAACGGTGAAGCTGGTGAAGAAGGCCGCCCAAGAAGGACATTTGATCGCCACAGCGGAACTGGACGAGGTGGTGGATTCAAACGTGAAGGTGCTGGACGAGGCAATTGGGGAACTCAAAATGATGAAATTGCTCAGGTGACTGAGGAAGTTTCAAATGAAACTGAAAAGAATGTGGCTGAGGAGAAGCCTGCTGGCGAGGAAGATGCAGCAGCAGCTGAAGGAAACAAGGAAACTCCTGCTATTGAAGTTGAAGAGAAAGAACCCGAGGATAAGGAGATGACACTGGAAGAATATGAGAAAGTGCTGGAAGAGAAAAGGAAAGCCCTGCAGGCACTCAAGACTGAAGGAAGAAAGGTGGACACGAAGGAGTTTGAATCCATGAAGCCACTCTCATGCAAGAAAGAGAATGACGAGATCTTTGCTAAACTGGGATCTGACAAGGACAAGCGCAAAGATGCCTTTGAGAAGGAGAAGGCAAGGAAGGCCTTGAGCATTAACGAGTTTCTGAAGCCTGCTGAAGGGGAGAAGTACTACAACCCAGGTGGACGTGGTGGCCGTGGAGGACGTGGCGGCCGTGGTGGTTCAAGAGGAGGAGGTTATGGTGGAAATGCATACAGCAATGTCCCAGCCCCATCCATTGAGGATCCTGGGCAATTCCCAACCTTGGGTGGTGGCAAGTGA 1116 0.5242 MATINPFDLLGDDAEDPSQLIAAEQLKAAAAAAAAPKKGIDQGKQAAPKKPAQLPSKPLPPSQAVREARNEPSRGGRGGGRGFGRGRGGGGFGRDFSNDDNTLPAPPANQGSFEGDSGNPSERRGYGAPRAPYRAGGERRRGGFSNGEAGEEGRPRRTFDRHSGTGRGGGFKREGAGRGNWGTQNDEIAQVTEEVSNETEKNVAEEKPAGEEDAAAAEGNKETPAIEVEEKEPEDKEMTLEEYEKVLEEKRKALQALKTEGRKVDTKEFESMKPLSCKKENDEIFAKLGSDKDKRKDAFEKEKARKALSINEFLKPAEGEKYYNPGGRGGRGGRGGRGGSRGGGYGGNAYSNVPAPSIEDPGQFPTLGGGK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00102 371 Gene3D - 153 268 - -
Trre15g00102 371 Coils Coil 240 260 - -
Trre15g00102 371 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 369 IPR039764 GO:0003723
Trre15g00102 371 Pfam Stm1 1 79 IPR019084 -
Trre15g00102 371 MobiDBLite consensus disorder prediction 183 197 - -
Trre15g00102 371 Pfam Hyaluronan / mRNA binding family 155 264 IPR006861 -
Trre15g00102 371 MobiDBLite consensus disorder prediction 102 117 - -
Trre15g00102 371 MobiDBLite consensus disorder prediction 198 238 - -
Trre15g00102 371 SMART HABP4_PAI_RBP1_2 155 265 IPR006861 -
Trre15g00102 371 MobiDBLite consensus disorder prediction 29 238 - -
Trre15g00102 371 MobiDBLite consensus disorder prediction 144 168 - -
Trre15g00102 371 MobiDBLite consensus disorder prediction 318 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00102 Trre-Chr15 723861 726945 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00102 K13199 - gmx:100791259 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00102 15 723861 726945 Trre15g00102 15 723861 726945 ECH
Trre15g00102 15 723861 726945 Trre13g02222 13 19623044 19625823 PCT