Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02222 ATGGCCACTGCCAATCCATTTGATTTGCTTGGTGATGATGCTGAGGACCCTTCTCAGCTCATCGTTGCTGAACAGCTTAAAGCTGCTGCTGCTCCGGTTAAGAAACCTGCTGACAAATTACAGGGCAAGCAACGTGCTGCTGCTGCTGCTTCTCAGGTTAAGCCTGCTCAGTTGCCTTCTAAGCCCACTCCTCCCGCTCAGGCTGTGAGGGAGTCCAGAAATGAAGGAGGCCGTGGCGGTCGTGGATATGGAGGACGAGGAGGTGACCGTGGATATGGTGGCGGACGTGGAGGTGATCGTGGATATGGTGGCGGACGTGGAGGTCGTGGGTTTGGTCGTGATTACTCTAATGACGAGAATTCGTTCCCTGGCTCTGGAGCACCTGAAAACCACGGTCCTATCGAAGGAGATAACTCTTCAGAGAGACGTAACTATGGTGGACCAAGACCTCCCTACCGTGGCGGTCGTCGTGGAGGTTTCAGCAATGGCGAAGCTGGTGAAGAAGGACGTCCTCGAAGAACATTTGAACGCTGCAGTGGAACTGGCCGAGGAAATGAATTCAAACGTGAAGGTGCTGGACGTGGTAACTGGGGAACAGAAACTGACGAATTTGCCCCGGTGACTGAAGAAGCTGTGATTGAAGGTGAAAAGAATTTGGGCGATGAGAAACCTGCTGTTGAAAATGATGCTGCTGAAGGAAACAAGGATACTCCTGCTAATGAAGCTGAAGAAAAAGAGCCTGAGGATAAGGAGATGACTCTGGAGGAATATCAGAAACTGCTGGAAGAGAAAAGGAAGGCTTTGCAATCACTCAAGACTGAAGAGAGAAAAGTTGACACTAAAGAGTTTGAAACCATGCAAGCCTTATCGTGCAAGAAAGACAATTTTGAAATCTTTGCTAAATTGGGATCTGACAAGGATAAACGCAAAGAGGCTTTTGACAAGGAAGAGAAAGCTAAGAAGTCTGTCAGCATCAATGAGTTTCTGAAGCCAGCTGAAGGGGATGCCTATTACAGCTCAGGTGGGCGTGGAAGGGGACGTGGCCGTGGAGCACGAGGTGGAGGTGGAGGTTTTCGTGGAAATTTCAATAACAATGTCCCAGCTCCATCCATTGAAGATCCTGGGCATTTCCCAACCTTAGGTGCCAAGTGA 1152 0.4965 MATANPFDLLGDDAEDPSQLIVAEQLKAAAAPVKKPADKLQGKQRAAAAASQVKPAQLPSKPTPPAQAVRESRNEGGRGGRGYGGRGGDRGYGGGRGGDRGYGGGRGGRGFGRDYSNDENSFPGSGAPENHGPIEGDNSSERRNYGGPRPPYRGGRRGGFSNGEAGEEGRPRRTFERCSGTGRGNEFKREGAGRGNWGTETDEFAPVTEEAVIEGEKNLGDEKPAVENDAAEGNKDTPANEAEEKEPEDKEMTLEEYQKLLEEKRKALQSLKTEERKVDTKEFETMQALSCKKDNFEIFAKLGSDKDKRKEAFDKEEKAKKSVSINEFLKPAEGDAYYSSGGRGRGRGRGARGGGGGFRGNFNNNVPAPSIEDPGHFPTLGAK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02222 383 Coils Coil 250 281 - -
Trre13g02222 383 Gene3D - 169 282 - -
Trre13g02222 383 MobiDBLite consensus disorder prediction 166 196 - -
Trre13g02222 383 MobiDBLite consensus disorder prediction 334 383 - -
Trre13g02222 383 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 381 IPR039764 GO:0003723
Trre13g02222 383 Pfam Hyaluronan / mRNA binding family 171 278 IPR006861 -
Trre13g02222 383 Pfam Stm1 1 82 IPR019084 -
Trre13g02222 383 SMART HABP4_PAI_RBP1_2 171 279 IPR006861 -
Trre13g02222 383 MobiDBLite consensus disorder prediction 30 252 - -
Trre13g02222 383 MobiDBLite consensus disorder prediction 214 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02222 Trre-Chr13 19623044 19625823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02222 K13199 - gmx:100814825 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02222 13 19623044 19625823 Trre13g02222 13 19623044 19625823 ECH
Trre15g00102 15 723861 726945 Trre13g02222 13 19623044 19625823 PCT