Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00021 ATGAGGACAAACCTAAGTTTTTTATGGTGTGTTTGGATTTACCTTTGTGGGTCTTGTGCTGGAAGATTTGTGGTAGAAAAAAACAATTTAAAAATAACTTCTCCAAAATCATTGAGAGGTATATATGAATGTGCAATTGGGAATTTTGGTGTCCCCAAATATGGTGGAACCATGATTGGGACAGTTGTGTACCCAAAGTATAATCAGAATGGATGTACAAAATTTAATGATGCAGATACATCATTGGGTTCCAAGCCTGGAAGCTTCCCCAGCTTTGTTCTTGTTGATCGAGGAGATTGTTATTTCACATTAAAGGCATGGAATGCTCAGATTGGTGGAGCAGCAGCTATTCTTGTTGCAGATGACAGGGTAGAACCATTGATCACCATGGACACTCCTGAAGAAGGGAATGGTGCTACCAAGGATGATTATATTGAAAAGATTACAATTCCTTCAGCTCTTATCAGCAAATCACTCGGAGACAATATCAAGTCGGCTCTCGCAAGTGGAGCAATGGTGAACGTAAATCTTGATTGGAGAGAGGCACTTCCCCACCCTGATGAGAGAGTCGAGTATGAGTTATGGACAAGTAGCAATGATGAGTGTGGTCCAAAGTGTGAGAGTGAAATTAATTTTTTGAAGGGTTTTAAAGGTGCAGCTCAATTACTTGAGCAAAAAGGGTTCACTCGGTTTACCCCTCACTATATAACTTGGTATTGTCCGGAAGCATTCATCTTAAGCCAACAGTGTAAATCTCAGTGCATTAATAATGGGAGGTACTGTGCACCTGATCCGGAGCAAGATTTCAGTAGAGGGTATGATGGGAAAGATGTTGTTATTCAAAATTTACGCCAAGCATGCTTCTTTAATGTTGCAAATGAAAGTGGGAAGCCTTGGAAATGGTGGGACTATGTTACCGACTTTGCAATCCGCTGTCCAATGAGAGCGAAAAAATACACCGAAGAATGTTCAGATCAAGTTGCTAAATCTCTAGGTGTTGATATGAATAAGATTAAAGATTGTATAGGGGATCTCGATGCAGATGTTGAAAATCCTATTCTTAAGGCAGAACAGGATGCACAGATTGGCCAAGGGTCACGTGGTGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGGCAAGCTGTCTAAAGCAGCGGTACTGAAGGCAATCTGTGCAAGTTTCCAAGAGACCACTGAGCCATCAATTTGCTTAACTCCAGACATGGAAACGAATGAGTGTCTGGCAAACAATGGTGGTTGTTGGAAGGACAAAGCTGCCAACATTACTGCATGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTGCAAAATGTGAAGTTTGTTGGTGATGGATACACTCACTGTGAAGCTAGTGGACCCTTGAGGTGTGCAATCAACAACGGCGGTTGTTGGCAGGGATCCCAAGGAGGCAGAGCCTACTCTGCGTGTATCGATGACCATACAAAAGGATGCAAGTGTCCACCTGGATTCAAGGGTGATGGAGTCCACTCCTGTGAAGACGTGGATGAGTGTAAAGAGAAATTGGCATGCCAGTGCCCAGAGTGCGCCTGCAAAAACACCTGGGGGAGTTATGAATGCAGATGTAGTAACGGTTTGTTCTATGTGCGGGAAAGTGACATGTGTATTGGTAAATACAGCGCTTCGGTGTCTAGCGGGGGATTTGTTTGGATGCTTATACTGATATTGGGTATTGGTGGAGCTGGGGGATATGCATTCTACAAGTACAGAATCCAGAGATATATGGATTATGAGATAAGGGCAATAATGGCCCAATACATGCCATTGGATAATCAACCGGAGAACTCAAATCAAGTTCAGCATGCAGTCTAG 1878 0.4281 MRTNLSFLWCVWIYLCGSCAGRFVVEKNNLKITSPKSLRGIYECAIGNFGVPKYGGTMIGTVVYPKYNQNGCTKFNDADTSLGSKPGSFPSFVLVDRGDCYFTLKAWNAQIGGAAAILVADDRVEPLITMDTPEEGNGATKDDYIEKITIPSALISKSLGDNIKSALASGAMVNVNLDWREALPHPDERVEYELWTSSNDECGPKCESEINFLKGFKGAAQLLEQKGFTRFTPHYITWYCPEAFILSQQCKSQCINNGRYCAPDPEQDFSRGYDGKDVVIQNLRQACFFNVANESGKPWKWWDYVTDFAIRCPMRAKKYTEECSDQVAKSLGVDMNKIKDCIGDLDADVENPILKAEQDAQIGQGSRGDVTILPTLVINNRQYRGKLSKAAVLKAICASFQETTEPSICLTPDMETNECLANNGGCWKDKAANITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGPLRCAINNGGCWQGSQGGRAYSACIDDHTKGCKCPPGFKGDGVHSCEDVDECKEKLACQCPECACKNTWGSYECRCSNGLFYVRESDMCIGKYSASVSSGGFVWMLILILGIGGAGGYAFYKYRIQRYMDYEIRAIMAQYMPLDNQPENSNQVQHAV 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00021 625 Pfam PA domain 60 163 IPR003137 -
Trre15g00021 625 Gene3D Glutaredoxin 265 400 - -
Trre15g00021 625 Gene3D Laminin 410 455 - -
Trre15g00021 625 SMART egfca_6 516 558 IPR001881 GO:0005509
Trre15g00021 625 CDD EGF_CA 516 547 - -
Trre15g00021 625 Gene3D Laminin 470 553 - -
Trre15g00021 625 SUPERFAMILY PA domain 92 173 IPR046450 -
Trre15g00021 625 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 8 617 - -
Trre15g00021 625 FunFam vacuolar-sorting receptor 1 409 465 - -
Trre15g00021 625 FunFam Vacuolar-sorting receptor 1 20 186 - -
Trre15g00021 625 ProSitePatterns Calcium-binding EGF-like domain signature. 516 542 IPR018097 GO:0005509
Trre15g00021 625 Gene3D - 20 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00021 Trre-Chr15 198080 202131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00021 4 619 Miscellaneous Gene Families AT3G52850 72.006 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00021 - - gmx:100815266 1137.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01840 13 15638687 15644028 Trre15g00021 15 198080 202131 PCT