Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01840 ATGAACAATAATAAGTTGAATCTTCTGTTGTTGTTGTGTGTTTTGTTTTTGTTGTTGGATTGTTGTTTTGGTAGGTTTTTGGTGGAGAAGAATAGTTTGAAAATCACTTCTCCAAAATCTTTGAAGGGTACATATGAATGTGCAATTGGGAATTTTGGGGTGCCTCAGTATGGTGGAACATTGATTGGTTCTGTGGTTTATCCAAATGTGAATAAGAAAGGATGCAGGAACTTTACTGATGTTAATGCTTCGTTTAAGTCCATGCCTGGAAGTTTCCCTACCTTTCTTCTTGTTGATCGTGGAGATTGCTATTTCACTTTGAAGGCATGGAATGCACAAAATGGTGGAGCAGCAGCTATTCTCGTAGCTGATGACAAAGAAGAAACACTAATCACCATGGACACTCCTGAAGAAGGTCATGTTGCAAACGATGATTATATTGAAAAGATTAGTATTCCTTCTGCTCTTATCAGCAAAACTTTGGGGGATAGAATCAAGGAGGCTCTCTCAAATGGGGAGATAGTTCACATAAATCTTGATTGGAGAGAAGCTCTTCCGCATCCTGACGACAGAGTCGAGTATGAATTATGGACGAATAGCAACGATGAATGTGGACCAAAGTGTGACAATCAAATCAATTTTGTGAAGAACTTTAAAGGAGCAGCTCAACAACTTGAGAAGAAGGGGTTCACTCAATTTACCCCTCACTATATAACTTGGTTTTGCCCTAGAGAATTTCTCTTAAGCAAACAATGCAAGTCTCAGTGTATAAACCACGGAAGATACTGTGCTCCGGACCCTGAGCAAGATTTCAATAAAGGGTATGATGGTAAAGATGTTGTTGTACAGAACTTACGCCAAGCTTGCTTCTTTAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTGACCGACTTTTCAATCCGTTGCCCCATGAAAGAGAAAAAATACACAGAAGAATGTTCAGATCAAGTTATTAAATCTCTTGGTGTTGATCTGAAGAAGATTAAAGACTGTGTCGGGGATCCTCATGCTGATGTTGATAACCCTGTTCTCAAAGCAGAACAGGATGCACAGATTGGCAAAGAGTCTCGCGGTGATGTTACTATACTGCCTACTCTTGTGATAAATAACAGACAATACAGAGGTAAGTTGTCAAGACCAGCAGTTCTCAAGGCAATATGTTCAGGTTTCCAAGAGACCACTGAACCGTCAATTTGCTTAACTCCAGACATGGAAACAAACGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGAAAAATCTTCTAACATTACTGCATGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTAAAAAATGTGAAGTTTGTTGGCGATGGATATACCCACTGTGAAGCTTCAGGAGCCTTAAGCTGTGAATTCAACAATGGAGGTTGTTGGAAATTGTCCCATGGTGGAAAACTTTACTCTGCTTGCCATGAAGACTATAGAAAAGGTTGTGAGTGTCCCTCAGGGTTCAAAGGGGATGGAGTCTTGTCCTGTGAAGATATTGATGAGTGCAAAGAAAAGTCGGCGTGCCAGTGTCCAGACTGCAAATGCAAAAATACCTTTGGGAGCTATGAATGCAAATGCAATAGTGGTTTGCTCTACTCACGAGAAAATGACACATGTGTTGGTAAATATACTTCTTCTGCAGTGTCGAGTATTTGGATGATTATCGTTGTCTTGGTCATTACTCTTTCAGGAGGATATGCATTTTACAAATACAGAATCCAGAGATATATGGACACCGAGATTCGTGCAATTATGGCTCAATACATGCCCTTGGATAATCAACCTCTTATTGTTCCCAATAATCAAGTTCATCATGATATCTAG 1884 0.4023 MNNNKLNLLLLLCVLFLLLDCCFGRFLVEKNSLKITSPKSLKGTYECAIGNFGVPQYGGTLIGSVVYPNVNKKGCRNFTDVNASFKSMPGSFPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKEETLITMDTPEEGHVANDDYIEKISIPSALISKTLGDRIKEALSNGEIVHINLDWREALPHPDDRVEYELWTNSNDECGPKCDNQINFVKNFKGAAQQLEKKGFTQFTPHYITWFCPREFLLSKQCKSQCINHGRYCAPDPEQDFNKGYDGKDVVVQNLRQACFFKVANESGKPWQWWDYVTDFSIRCPMKEKKYTEECSDQVIKSLGVDLKKIKDCVGDPHADVDNPVLKAEQDAQIGKESRGDVTILPTLVINNRQYRGKLSRPAVLKAICSGFQETTEPSICLTPDMETNECLENNGGCWQEKSSNITACRDTFRGRVCECPIVKNVKFVGDGYTHCEASGALSCEFNNGGCWKLSHGGKLYSACHEDYRKGCECPSGFKGDGVLSCEDIDECKEKSACQCPDCKCKNTFGSYECKCNSGLLYSRENDTCVGKYTSSAVSSIWMIIVVLVITLSGGYAFYKYRIQRYMDTEIRAIMAQYMPLDNQPLIVPNNQVHHDI 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01840 627 SUPERFAMILY EGF/Laminin 514 560 - -
Trre13g01840 627 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
Trre13g01840 627 FunFam vacuolar-sorting receptor 1 411 467 - -
Trre13g01840 627 SUPERFAMILY PA domain 95 172 IPR046450 -
Trre13g01840 627 FunFam Vacuolar-sorting receptor 1 23 188 - -
Trre13g01840 627 CDD EGF_CA 518 549 - -
Trre13g01840 627 Pfam PA domain 63 165 IPR003137 -
Trre13g01840 627 SMART egfca_6 518 560 IPR001881 GO:0005509
Trre13g01840 627 Gene3D Laminin 412 457 - -
Trre13g01840 627 Gene3D - 23 188 - -
Trre13g01840 627 Gene3D Laminin 472 556 - -
Trre13g01840 627 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 11 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01840 Trre-Chr13 15638687 15644028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01840 6 625 Miscellaneous Gene Families AT3G52850 70.833 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01840 - - gmx:100807514 1126.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01840 13 15638687 15644028 Trre13g01840 13 15638687 15644028 ECH
Trre13g01840 13 15638687 15644028 Trre15g00021 15 198080 202131 PCT