Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00013 ATGGAAGCACTCAAGGGATTCCAATTATGTCTTATTTCCTTTCTCCTTTTTCTCACTACTCTTATTACTCAAACCTTAAGCTCAACTGCATTTGATGACGGTGAATATAAAGATTGGGAAAGCTATATTGATCATATTCCAAATTCCATCTTAACTTATGGGAGTGAAATGGAGATGGAAGCTGAATGGCAGATGGTACAAAAGAAAGGAAACCAATTTGTAGTGAATGAGCAACCTTTCTATGTAAACGGATTCAACACTTATTGGTTGATGGTATTTGCCGCGGATGAGTCCACAAGAGGAAAGGTCACTGATGTGTTCAAACGTGCATCCTCGGTTGGTATGACAGTATGTAGAACATGGGCCTTCAATGATGGTCAATGGAGAGCTCTTCAGAAATCTCCATCACTTTATGATGAACAAGTATTCAAGGCCCTTGATTTTGTTGTGAGTGAAGCAAAGAAATACAGAATCAGGCTCATATTATCTTTGGTTAACAATTGGGAGGAATATGGTGGCAAAGCACAGTATGTCAAGTGGGGCAATGCTGCTGCTGGCCTTAACTTGACCTCTGATGATGAGTTTTTTTCACACCCAACTCTCAGAGGATATTACAAGGACCATGTAAAGATGGTGCTCAATAGAGTTAACACATTCACAAATATCACTTATAAGGAAGATCCAACAATATTTGCTTGGGAACTAATGAACGAACCTCGATGCTCCTCTGACTCCTCAGGTGACAAGTTGCAGGAATGGATAAAAGAGATGGCTTTCTATGTTAAGAGTGTTGATCCAAAACACCTAGTGGAGATTGGCCTAGAAGGATTTTATGGACCTTCAACACCTCAGAGATTTCAGTTCAACCCAAATTCATATGCTCAACTGGTTGGAACTGATTTTATAAGAAACCACCAGGTTCTAGGTGTCGACTTCGCTTCTGTTCACATATATCCAGACTCTTGGATTTCACAATCAGTTGGTGATAGCCATATACCATTTGTGAAGTCTTGGATGGAAGCACACATAGAGGATGCTGAAAAGTATCTTGGAATGCCAGTTGTTTTTGGTGAGTTTGGTGTATCTGCAAAAGATCCTGGGTATAATTCAACATATAGAGATACACTTATAAATGTTGTGTACAAGACAATTCTAAACTCTACAAAGAAAGGAGGCAGTGGTGCCGGAAGCCTTTTGTGGCAGCTGTTTCCTGATGGAACGGATTACATGGATGACGGTTATGCAATTGTTCTCTCAAAAGCTCCTTCTACTTCAACCATGATATCCCTTCAATCCACAAGGCTTGCCCTATTCAACTCCCTCTGCTCTGAGAGATGCCACTGGAGTTGTAAGAAGAAAAAAAAGTACTATATCAGGATGATAACCTTGCCGCAAGAGTGTCAACTTCAGTTTGAAGGGTGA 1422 0.4037 MEALKGFQLCLISFLLFLTTLITQTLSSTAFDDGEYKDWESYIDHIPNSILTYGSEMEMEAEWQMVQKKGNQFVVNEQPFYVNGFNTYWLMVFAADESTRGKVTDVFKRASSVGMTVCRTWAFNDGQWRALQKSPSLYDEQVFKALDFVVSEAKKYRIRLILSLVNNWEEYGGKAQYVKWGNAAAGLNLTSDDEFFSHPTLRGYYKDHVKMVLNRVNTFTNITYKEDPTIFAWELMNEPRCSSDSSGDKLQEWIKEMAFYVKSVDPKHLVEIGLEGFYGPSTPQRFQFNPNSYAQLVGTDFIRNHQVLGVDFASVHIYPDSWISQSVGDSHIPFVKSWMEAHIEDAEKYLGMPVVFGEFGVSAKDPGYNSTYRDTLINVVYKTILNSTKKGGSGAGSLLWQLFPDGTDYMDDGYAIVLSKAPSTSTMISLQSTRLALFNSLCSERCHWSCKKKKKYYIRMITLPQECQLQFEG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00013 473 Gene3D Glycosidases 63 438 - -
Trre15g00013 473 PANTHER - 13 456 IPR045053 GO:0004553
Trre15g00013 473 Pfam Cellulase (glycosyl hydrolase family 5) 76 379 IPR001547 GO:0004553|GO:0071704
Trre15g00013 473 FunFam Mannan endo-1,4-beta-mannosidase 6 62 439 - -
Trre15g00013 473 SUPERFAMILY (Trans)glycosidases 66 422 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00013 Trre-Chr15 168247 170252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00013 55 455 Glycoside Hydrolase AT5G01930 73.566 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00013 K19355 - gmx:100801139 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01853 13 15772573 15774912 Trre15g00013 15 168247 170252 PCT