Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01853 ATGGAGAAATTTGGAATACATATGCTTTTTTTATTCCTTCTTTTGATTCTCACAAAACAACTAGCTTCCAATGCTTTTATTAACAGTATGGCTGATGAGGAGTTGCTAAATGAAGGCCAAAATCATGTCCAAAATATTATCACAAGTTATGATGAAACAATGTTGGAGATGGAAGAGGATGAATGGCAAATGGTGGGGAAGAAAGGAAACCAATTTGTGGTGAATGATCAACCTTTCTATATAAATGGATTCAACACATATTGGTTGATGGTTTTTGCTGCAGATGACTCCACTAAAGGAAAAGTCACTGAGGTCTTCAAACAAGCTTCCTCATTTGGTATGACAGTTTGTAGGACTTGGGCTTTCAATGATGGTCAATGGAGAGCCCTACAGAAATCCCCTTCAGTTTATGATGAAGACATCTTCAAGGCCTTGGACTTTGTGGTAAGTGAAGCAAGGAAATACAAAATCAGGTTGATATTATCATTGGCAAACAATTGGGAAGCATATGGTGGCAAAGCACAATATGTGAAATGGGGCAAAGAGGCTGGCCTAAACTTGACATCTGATGATGATTTTTTCTCACATCCAACCCTTAGAAGCTACTATAAAGCCCATGTTAAGACTGTGCTGAATAGAGTTAATACATTGACAAATATCACTTATAAGGAAGATCCTACAATTTTTGCATGGGAGTTGATGAATGAGCCTAGATGCAACTCAGATCCCACAGGTGATACCTTACAAGATTGGATACAAGAAATGGCATTTCATGTGAAGAAAATTGATCCAAAACATTTGGTTGAGATTGGATTAGAAGGATTTTATGGTCCCTCAACACCTCAGAGACTTCAATTCAATCCAAATACATATGCTCAACAGGTTGGAACTGATTTTATCAGGAACCACCAAGTTCTTGGTGTGGACTTTGCTTCTGTTCATATGTATGCTGACTCTTGGGTTTCACCACAAATTGCTGATACACATATCCCATTCATAATATCATGGATGGAGGCACACATTGAGGATGCCGAAAAGTATCTCGGAATGCCAGTTGTTTTTACTGAGTTTGGTGTATCATCCAAAGATCCTGGCTACAATTCATCATATAGAGACACACTAATAAGCACTGTCTACAGTTCAATCTTAAACTCAACAAAGAAAGGAGGGAGTGGTGCTGGATGCCTCTTGTGGCAGGTGTTTCCTGAAGATACAGATAATATGGATGATGGTTATGCTATTGTTTTATCAAAGTCTCCTTTAACTTCAAGTATTGTATCTCTTCATTCTTATAGGCTTAATTTGTTCAACACTTTGTGTTCTTCTAAATGCAATTGGAGTTGTAAGAAGAAGAAAATGTTGGAGAAGATACTATATCATGATGAACTCTAA 1392 0.375 MEKFGIHMLFLFLLLILTKQLASNAFINSMADEELLNEGQNHVQNIITSYDETMLEMEEDEWQMVGKKGNQFVVNDQPFYINGFNTYWLMVFAADDSTKGKVTEVFKQASSFGMTVCRTWAFNDGQWRALQKSPSVYDEDIFKALDFVVSEARKYKIRLILSLANNWEAYGGKAQYVKWGKEAGLNLTSDDDFFSHPTLRSYYKAHVKTVLNRVNTLTNITYKEDPTIFAWELMNEPRCNSDPTGDTLQDWIQEMAFHVKKIDPKHLVEIGLEGFYGPSTPQRLQFNPNTYAQQVGTDFIRNHQVLGVDFASVHMYADSWVSPQIADTHIPFIISWMEAHIEDAEKYLGMPVVFTEFGVSSKDPGYNSSYRDTLISTVYSSILNSTKKGGSGAGCLLWQVFPEDTDNMDDGYAIVLSKSPLTSSIVSLHSYRLNLFNTLCSSKCNWSCKKKKMLEKILYHDEL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01853 463 FunFam Mannan endo-1,4-beta-mannosidase 6 61 437 - -
Trre13g01853 463 Gene3D Glycosidases 62 436 - -
Trre13g01853 463 Pfam Cellulase (glycosyl hydrolase family 5) 75 399 IPR001547 GO:0004553|GO:0071704
Trre13g01853 463 SUPERFAMILY (Trans)glycosidases 67 420 IPR017853 -
Trre13g01853 463 PANTHER - 7 453 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01853 Trre-Chr13 15772573 15774912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01853 59 463 Glycoside Hydrolase AT5G01930 71.007 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01853 K19355 - gmx:100811794 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01853 13 15772573 15774912 Trre13g01853 13 15772573 15774912 ECH
Trre13g01853 13 15772573 15774912 Trre15g00013 15 168247 170252 PCT