Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04798 ATGGCGGTCACCACTCACTCTCTAACCGCTACAGAAAAGAAACACTGGTGGCTCACAAACCGTAAGATTGTTGAGAAATACATAAAAGACGCAAGAAGCTTAATAGCAACGCAAGAACAAAACGAGGTTGTTTCGGCTTTGAATCTTCTAGATGCAGCTTTAGCTATATCACCGCGTTTGGATCAAGCGCTTGAGCTTAAAGCTAGATCGTTACTTTATCTACGAAGATTCAAAGATGTTGCTGATATGCTTCAAGATTACATTCCTAGTTTAAGAATGTCGAATGAAGATCCTTCCTCTGTTTCTTCCGATAGTTCTTCAAGAGAAGGAGTTAAGCTTCTTTCATCTGATTCACCTATTCGAGATCAGAGTTTTAAGTGCTTTTCTGTTTCTGATCTCAAGAAGAAGGTTATGGCAGGTCTTTGTAAAACTTGTGATAAAGAAGGGCAATGGAGATACTTGGTTTTGGGTGAAGCATGCTGCCATTTAGGACTAATGGAGGATGCAATGGTTCTTCTCCAAACTGGAAAACGAATTGCCAGTGCAGCATTCCGGCGAGAGAGTGTCTGCTGGTCTGACGACAGTTTTCCTTTATTAACCATCCCTATTGCTGGAGATACCCCAAACCAACAACCCACCACACCGCCGCGAGCCCCTCTCAATGAAACAGAAAGTGTAACACACCTCCTCAGCCACATCAAGTTCCTCCTCCGACGTCGTGCAGCAGCACTTGCTGCCCTCGACGCTGGTCTCTACTCAGAAGCCATCCGCCATTTCTCAAAAATAGTAGATGGCCGCCGTGCTGCCCCACAAGGTTTTCTTGCAGAATGCTACATGCACAGAGCATCTGCCCACCGTTCTGCCGGTCGAATTGCAGAGTCCATTGCTGATTGTAACCGCACCCTTTCGCTAGACCCAACCTGTATTCAAGCCCTAGAAACTAGAGCTTCACTCTTCGAAACAATTCGTTGCTTACCTGATTCACTACACGATTTAGAACATCTAAAGCTTCTCTACAACTCCATCTTACGTGATCGGAAACTTCCCGGTCCAGCATGGAAACGCCACAATGTAAGATACAGAGAGATTCCAGGAAAACTCTGTGCCTTAACCACCAAGATTCAAGAATTAAAACAAAGGTTGTCATCTGGTGAAACAACTAGTGTCGATTACTATGCATTGATTGGAGTTCGACGCGGGTGTTCGCGTTCTGAACTTGAGAGAGCTCATTTGTTGCTGTGTCTTCGCCATAAGCCAGATAAAGCTACAAATTTCATCGAACGATGTGAGTTTGCGGATGAACGTGATATTGAGACAGTTAAAGAGAAAGCTAAGATGTGTTCGTTGCTGTTATATAGATTGATTCAAAAGGGCTACACTAGTGTGATGAGTAATGTTTTAGATGAGGAGGCTGCTGAGAAACAAAAGAAGAAGAATGTTGCTGCTGCCGCACAAGCACAAGCACAAGCACAAGCTCAGGCGGCGGCAATTCAAGTTCAAGCAATTAAGAAAACAAATGAAGCGGAGTTAAAAAATAATAACGCTGCAGATAAGAGTAGTAGTGATGTTTTTGCGGAAAATGACCAGTCTCTGATATCATCTTGCAATGTGAATCCGGCGGTGTTTCAAGGTGTATTTTGCCGTGATCTTGCGGTGGTAGGAAACTTGTTGACGCAGGTCGGATTTAATCGTCCGATTCCGGTGAAATATGAAGCATTAAGCTGCTAA 1728 0.4398 MAVTTHSLTATEKKHWWLTNRKIVEKYIKDARSLIATQEQNEVVSALNLLDAALAISPRLDQALELKARSLLYLRRFKDVADMLQDYIPSLRMSNEDPSSVSSDSSSREGVKLLSSDSPIRDQSFKCFSVSDLKKKVMAGLCKTCDKEGQWRYLVLGEACCHLGLMEDAMVLLQTGKRIASAAFRRESVCWSDDSFPLLTIPIAGDTPNQQPTTPPRAPLNETESVTHLLSHIKFLLRRRAAALAALDAGLYSEAIRHFSKIVDGRRAAPQGFLAECYMHRASAHRSAGRIAESIADCNRTLSLDPTCIQALETRASLFETIRCLPDSLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRLSSGETTSVDYYALIGVRRGCSRSELERAHLLLCLRHKPDKATNFIERCEFADERDIETVKEKAKMCSLLLYRLIQKGYTSVMSNVLDEEAAEKQKKKNVAAAAQAQAQAQAQAAAIQVQAIKKTNEAELKNNNAADKSSSDVFAENDQSLISSCNVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04798 575 Coils Coil 467 487 - -
Trre13g04798 575 Gene3D Tetratricopeptide repeat domain 210 348 IPR011990 GO:0005515
Trre13g04798 575 SMART tpr_5 275 308 IPR019734 GO:0005515
Trre13g04798 575 SUPERFAMILY Chaperone J-domain 387 424 IPR036869 -
Trre13g04798 575 CDD DnaJ 390 424 IPR001623 -
Trre13g04798 575 Gene3D DnaJ domain 375 520 IPR036869 -
Trre13g04798 575 MobiDBLite consensus disorder prediction 94 115 - -
Trre13g04798 575 SUPERFAMILY TPR-like 241 336 IPR011990 GO:0005515
Trre13g04798 575 PANTHER OS01G0273500 PROTEIN 9 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04798 Trre-Chr13 54635126 54637753 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04798 - - gmx:100808420 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04798 13 54635126 54637753 Trre13g04798 13 54635126 54637753 ECH
Trre13g04798 13 54635126 54637753 Trre1g04472 1 50620132 50622816 PCT