Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04461 ATGGCAAGAATGTCTCAAGAACCACTCATTGTTGGGAGAGTCATAGGTGAAGTTCTTGATTCCTTCACCACAACCATGAAAATGACTGTGAGTTACAACAAGAAACAAGTCTTCAATGGCCGTGAGTTTTTCCCTTCCACTATCAACACCAAACCAAAAGTTGAAATTGATGGTGGTGACATGAGATCCTTCTTCACACTGGTGATGACAGACCCTGATGTTCCTGGCCCTAGTGATCCTTATCTAAGAGAACACTTGCACTGGATTGTGACAGATATTCCAGGAACAACAGATGCTACATTTGGGAAAGAAGTGGTGAGCTATGAGATACCAAAGCCAAATATAGGAATACACAGGTTTGTGTTTGTTTTGTTCAAACAAAAAAGCAGAGATTCAGTGACAACAACACCATCTTCAAGGGATCATTTCAACACTCGCAACTTTGCTTCACAGAATAATCTTGGTTTACCTGTTGCTGCTGTTTACTTCAATGCTCAGAGAGAAACAGCTGCAAGAAGACGCTAG 525 0.4133 MARMSQEPLIVGRVIGEVLDSFTTTMKMTVSYNKKQVFNGREFFPSTINTKPKVEIDGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDATFGKEVVSYEIPKPNIGIHRFVFVLFKQKSRDSVTTTPSSRDHFNTRNFASQNNLGLPVAAVYFNAQRETAARRR 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04461 174 ProSitePatterns Phosphatidylethanolamine-binding protein family signature. 65 87 IPR001858 -
Trre13g04461 174 Gene3D - 1 174 IPR036610 -
Trre13g04461 174 FunFam Terminal flower 1 1 174 - -
Trre13g04461 174 Pfam Phosphatidylethanolamine-binding protein 48 163 IPR008914 -
Trre13g04461 174 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 12 169 IPR035810 -
Trre13g04461 174 CDD PEBP_euk 26 165 IPR035810 -
Trre13g04461 174 SUPERFAMILY PEBP-like 13 168 IPR036610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04461 Trre-Chr13 52218090 52219344 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04461 K06910 - pvu:PHAVU_001G189200g 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04461 13 52218090 52219344 Trre13g04461 13 52218090 52219344 ECH
Trre13g04461 13 52218090 52219344 Trre1g02399 1 19290201 19293205 PCT