Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04434 ATGAGTGAACAACAAAGTAACAGCAACAACCAATTGGTAGTTCAGAATTCAGGAAGTTTAAGCTTCAGTAGTCATTTGTCTAAGGAAGATGAAGAGATGTCAAAATCTGCTCTTTCAACTTTTAGAGCTAAAGAAGAAGAAATTGAAAAGAAGAAGATGGAAGTTAGAGATAAGGTTCAGTTTCAGTTAGGTCGTGTTGAAGAAGAAACCAAACGTCTTGCTACTATTCGTGAGGAGCTTGAAGCACTTGCAGATCCAATGAGGAAAGAAGTTTCAGTTGTTAGAAAGAGAATTGATTCAATAAACAAAGAATTAAAGCCACTTGGTCATACCTGCCAGAAGAAGGAGAAAGAATACAAAGATGCTCTTGAAGCTTTTAATGAAAAGAACAGGGAAAAAGTACAGCTAATTACTAAATTAATGGAGCTGGTGGGTGAAAGTGAAAGATTGAGGATGAAGAAGCTAGAGGAGCTGAGTAAGAACATAGATTCAATGCAAATGCAATGA 507 0.3629 MSEQQSNSNNQLVVQNSGSLSFSSHLSKEDEEMSKSALSTFRAKEEEIEKKKMEVRDKVQFQLGRVEEETKRLATIREELEALADPMRKEVSVVRKRIDSINKELKPLGHTCQKKEKEYKDALEAFNEKNREKVQLITKLMELVGESERLRMKKLEELSKNIDSMQMQ 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04434 168 MobiDBLite consensus disorder prediction 25 41 - -
Trre13g04434 168 Coils Coil 155 168 - -
Trre13g04434 168 Coils Coil 112 132 - -
Trre13g04434 168 Pfam Transcriptional activator 15 164 IPR007033 -
Trre13g04434 168 MobiDBLite consensus disorder prediction 1 41 - -
Trre13g04434 168 PANTHER RAB6-INTERACTING PROTEIN GORAB 4 165 IPR007033 -
Trre13g04434 168 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04434 Trre-Chr13 51896213 51897945 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04434 - - gmx:100499923 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04434 13 51896213 51897945 Trre1g04859 1 54733216 54734261 ECH
Trre13g04434 13 51896213 51897945 Trre13g04434 13 51896213 51897945 ECH