Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04324 ATGGATGAAGGTGCTAAGAGAATGGAAGAAGGCTTAAATATATCATTGGATGAAGAGGCTAAAGATGTGGTCTTGAAGAAGCAAGAAACAACCAATAATATTTTAGATTCTAATATTAAGCAACAAATAGTTGAAGTGAATGATCAGCAGCCTCCATTGGTTAAGCAAAAGACAAAGAGGGTTGCAACACTTGATGCATTTAGGGGCCTCACCATAGTGATTATGATACTGGTAGACAAAGTTGGTGGAGTTTATCCACGCATTGATCATGCCCCTTGGGATGGATGTACTTTGGCTGATTTTGTTATGCCTTTCTTTCTCTTCATTGTTGGTGTTGCCATAGCCCTTGCATTAAAGAAAATTCACAAGATAAAATATGCTGTGAAAAAGATAATGCTTAGGACATTGAAGCTTCTCTTTTGGGGTATACTATTGCAAGGTGGATATTCTCATGCACTTGATGATGAGCTCTCATATGGAGTCAACATGAAATTCATTAGATGGTGTGGCATTCTCCAGAGAATAGCCCTTGTATATTGTGTAGTGGCTCTAATAGAAACATTTACCACCAAGCTTAGATCCACTACCTTGACTCCTGGACGCATAGCCATTTTTACAGCCTATAAATGGCAATGGTTTGGAGGTTTTGTGGCATTTCTCATTTACATGATCACAATTTTCACACTCTACGTTCCAGATTGGAGTTTTGTAGATCATGCTAACGGTGACGAACCAAAAAGATACACAGTCATATGTGGAACGAGAGGACACATAGGCCCTGCGTGTAACGCTGTTGGATATGTGGATCGACAAGTTTGGGGTGTTAACCATTTTTATTCGCATCCTGTTTGGAGACACTTGAAGGAATGTACATTCAGTTCTCCAGGTGAAGGTCCGCTTCGCGAAGATGCTCCAAGTTGGTGTCATGCTCCCTTTGAACCTGAAGGCTTGTTGAGTTCCATATCAGCAATTCTATCGGGCACCATCGGTATTCATTACGGGCATGTCCTTATTCATTTCAAGGGTCATTTAGATAGGCTCAAACATTGGGTCTCAATGGGGTTTGTGTTACTCACACTAGCCATTATCCTTCACTTTACAAATGCTATACCAATTAACAAGCAACTATATAGCATCAGCTATGTTTGTTTCACAGCTGGAGTGGCTGGAATTGTCTTCTCAGGTCTCTACATATTGATAGATGTTTGGGGGCTCCGGACGCCATTCCTGTTCTTGGAATGGATAGGAATGAATTCTATGTTAGTTTTTGTGATGGCAGCTCAAGGCATTTTTGCAGCATTTGTAAATGGATGGTATTATGAAAATCCAAATAACTCATTAGGACATTGGATTAAGAAGCATGTTTTTGTGAATGTTTGGAACTCAGAGAGAGTGGGAACACTCTTATATGTCATCTTTGCTGAAATTACCTTTTGGGGAATTGTTGCTGGAGTGTTGCACAAGTTAAAAATATACTGGAAATTGTAA 1488 0.3985 MDEGAKRMEEGLNISLDEEAKDVVLKKQETTNNILDSNIKQQIVEVNDQQPPLVKQKTKRVATLDAFRGLTIVIMILVDKVGGVYPRIDHAPWDGCTLADFVMPFFLFIVGVAIALALKKIHKIKYAVKKIMLRTLKLLFWGILLQGGYSHALDDELSYGVNMKFIRWCGILQRIALVYCVVALIETFTTKLRSTTLTPGRIAIFTAYKWQWFGGFVAFLIYMITIFTLYVPDWSFVDHANGDEPKRYTVICGTRGHIGPACNAVGYVDRQVWGVNHFYSHPVWRHLKECTFSSPGEGPLREDAPSWCHAPFEPEGLLSSISAILSGTIGIHYGHVLIHFKGHLDRLKHWVSMGFVLLTLAIILHFTNAIPINKQLYSISYVCFTAGVAGIVFSGLYILIDVWGLRTPFLFLEWIGMNSMLVFVMAAQGIFAAFVNGWYYENPNNSLGHWIKKHVFVNVWNSERVGTLLYVIFAEITFWGIVAGVLHKLKIYWKL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04324 495 PANTHER LD22376P 39 481 - -
Trre13g04324 495 Pfam Heparan-alpha-glucosaminide N-acetyltransferase, catalytic 60 206 IPR012429 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04324 Trre-Chr13 50878826 50882187 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04324 K10532 - gmx:100819967 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04324 13 50878826 50882187 Trre13g04324 13 50878826 50882187 ECH
Trre13g04324 13 50878826 50882187 Trre1g04495 1 50866604 50871541 PCT