Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04322 ATGGGTATACTACAAGACGATGTTGTGATTATCAGAGAACCAGAAAAACAAGATGAAGCTACAATCATAACCGTTAACTGTCCCGACAAACCCGGTCTAGGTTCTGATTTATGTCGAATCATTCTCTTCTTTCATATCACTATTCTCAGAGGAGATGTTTCAACGGATGGGAAATGGTGCTATATAGTATTTTGGGTGGTGGGAAAAGTAAAAACAAGGTGGAGTTTGTTGAAGAAGAGATTAATTGCTGCTTGTCCTACTTGTTCTTCTGCTTCTGGAATTTCTTATTATTGTTCTAATTTGCAGCCTTCAAAGCCTCCTGATGTTTTTCTTTTGAAGTTTTCTTGCAATGATCGGAAAGGTCTTTTACATGATGTCACAGAAGTTCTTTGTGAGCTTGAGCTCACCATAAAGAAAGTGAAGGTCTCTACGACACCTGACGGGAAAGTGTTGGATCTGTTTTTCATCACAGATACAAGGGAACTTCTACATACACAGAAGAGAAGGGATGACACAATTGATAAGTTAACAGCCATTTTGGAGGATATTTTTACTACAATTGACATTGAATTAGTTGGCTCAGAAACTACTGTTTTTTCTCAAGCATCTTCATCCCTTCCAAATGCAATCACAGATGTGTTTGATTTGCAAAGTGGGACTTCCACATCAGATTCTGTTTCTGTTGTGATGGACAACACATTGAGTCCTGCTCACACTCTTGTCCAAATTATGTGCCAAGATCATAAAGGTCTTCTTTTTGACATCATGAGAACTCTGAAGGACTTCAATATTCAGATATCGTATGGGAGATTCTCAAAGAAATCTAGAGGAAAATGTGAGATTGACTTGTTCATCATGCAAGTTGATGGAAAAAAGATAGTTGATCCGAGCAAGAAGGAGTCTTTGTCGTCACGTCTTAAGACAGAACTACTCCGTCCACTCAAAGTAGCTGTTGTGAGCAGGGGTCCCGATACAGAGTTACTGGTTGCAAACCCTGTGGAATTGGCAGGCAAAGGAAGACCTCTTGTTTTTCATGATATCACTCTTGCTCTCAAAATGCTTGGACTTTGCATCTTTTCGGCTGAAGTCGGAAGGCATGTGATCGGAGACCGCGAGTGCGAAGTTTATAGAGTCTTGCTTGATGAAGGGGAAGGGTTATCTTTTCCAAGGAACAAAATTGAGAAAGGTGTTTGGAAAATGTTGATGGGTTGGGACTGA 1218 0.4007 MGILQDDVVIIREPEKQDEATIITVNCPDKPGLGSDLCRIILFFHITILRGDVSTDGKWCYIVFWVVGKVKTRWSLLKKRLIAACPTCSSASGISYYCSNLQPSKPPDVFLLKFSCNDRKGLLHDVTEVLCELELTIKKVKVSTTPDGKVLDLFFITDTRELLHTQKRRDDTIDKLTAILEDIFTTIDIELVGSETTVFSQASSSLPNAITDVFDLQSGTSTSDSVSVVMDNTLSPAHTLVQIMCQDHKGLLFDIMRTLKDFNIQISYGRFSKKSRGKCEIDLFIMQVDGKKIVDPSKKESLSSRLKTELLRPLKVAVVSRGPDTELLVANPVELAGKGRPLVFHDITLALKMLGLCIFSAEVGRHVIGDRECEVYRVLLDEGEGLSFPRNKIEKGVWKMLMGWD 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04322 405 ProSiteProfiles ACT domain profile. 111 194 IPR002912 -
Trre13g04322 405 SUPERFAMILY ACT-like 107 190 IPR045865 -
Trre13g04322 405 SUPERFAMILY ACT-like 18 81 IPR045865 -
Trre13g04322 405 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 9 393 IPR040217 -
Trre13g04322 405 Gene3D - 103 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04322 Trre-Chr13 50867030 50869823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04322 - - gmx:100797226 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04322 13 50867030 50869823 Trre13g04322 13 50867030 50869823 ECH
Trre13g04322 13 50867030 50869823 Trre1g02533 1 20580038 20583070 PCT