Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04154 ATGAATTCCCACTCCCTAACTAATCTCCGTCACTCCAACCTCTCACTCAATCACAACCGTCCATCATTTCCAACTACCTTATCACCCTCCATCTCTTTCCGTTCACTTCCACCACCACAATTCCTCCCTCCGCCGTCGTTCAAACCACCACCAACCAAAGCCACATCCTCCTCAAACAACCCTCCCTTTCACAAACAACCAAAACCCCCTTCTCTACAACAAAACCCATTCCAAACCCTAATCTCTCTCTTCTCCCCCGCAATCGAAACCACTTGCATCGTCATTGCTGCAACCGCTTTCTTCTTCATGCGTTTCCATCACACTCCTGTCATCGCCGCCACTCTCTCTCCTCCATCCACCGTTGAAACCACCGAAACTGAAAACGAAAAAGAAAACACCACCACCTCGACTCAAAGCGAACAAGCGGAGATGCTAATTGAAGAGCAATTGCGCGAAAATCCAAACAACGCTGAAGCTTTACGTGATCTAATGGTAGTGAAAATCAAAGCACAAAAAGTTGATGAAGCGATTGAAGTTATAAACCGTTTGATTGAAATCGAACCTGAAGAAACTGAATGGCCTTTATTGAAAGCTAACATGTATATCTACAATGAAGACCATGAATCTGCTAAGAAATTATTTGAAGAGATTCTCAAGAAAGATCCACTTAAAGTTGAAGCTTATCACGGTCTTGTAATGGCGACTTCGAATTCGAATGAACCTTTGAAAGGATTGTTGAACAGAGTTGAGAAAGCAATGGAATTGTGCAAGAAACAGAAAAGGGTTTCTGATGTTAGAGATTTTAGGTTATTGGTTGCTCAGATTAAGGTGATGGAAGAGAATTACCCTGAGGCACTTGAAGCTTATCAAGATTTGGTGAAAGAAGAACCTAGAGATTTTAGGCCTTATCTATGTCAGGGTATTATATATACCTTGCTTAAAAAGAAAGATGAAGCTGAGAAACAATTTGATCAGTTTCGAAGGCTTGTTCCGAAGAATCATCCTTATAAAGAGTATTTTGATGATAACATGTTTGCTGCTAATTCTTTTCCGCAGAAATTCGAGAGGGAAGGAGCTGGTGCTAGGAATTGA 1092 0.4148 MNSHSLTNLRHSNLSLNHNRPSFPTTLSPSISFRSLPPPQFLPPPSFKPPPTKATSSSNNPPFHKQPKPPSLQQNPFQTLISLFSPAIETTCIVIAATAFFFMRFHHTPVIAATLSPPSTVETTETENEKENTTTSTQSEQAEMLIEEQLRENPNNAEALRDLMVVKIKAQKVDEAIEVINRLIEIEPEETEWPLLKANMYIYNEDHESAKKLFEEILKKDPLKVEAYHGLVMATSNSNEPLKGLLNRVEKAMELCKKQKRVSDVRDFRLLVAQIKVMEENYPEALEAYQDLVKEEPRDFRPYLCQGIIYTLLKKKDEAEKQFDQFRRLVPKNHPYKEYFDDNMFAANSFPQKFEREGAGARN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04154 363 SMART tpr_5 300 333 IPR019734 GO:0005515
Trre13g04154 363 SMART tpr_5 191 224 IPR019734 GO:0005515
Trre13g04154 363 SMART tpr_5 266 299 IPR019734 GO:0005515
Trre13g04154 363 SMART tpr_5 157 190 IPR019734 GO:0005515
Trre13g04154 363 Gene3D Tetratricopeptide repeat domain 264 341 IPR011990 GO:0005515
Trre13g04154 363 MobiDBLite consensus disorder prediction 34 74 - -
Trre13g04154 363 Gene3D Tetratricopeptide repeat domain 134 263 IPR011990 GO:0005515
Trre13g04154 363 SUPERFAMILY TPR-like 139 334 IPR011990 GO:0005515
Trre13g04154 363 PANTHER CELLULOSE SYNTHASE OPERON PROTEIN C 73 231 - -
Trre13g04154 363 MobiDBLite consensus disorder prediction 36 51 - -
Trre13g04154 363 Pfam Tetratricopeptide repeat 140 198 - -
Trre13g04154 363 Coils Coil 275 295 - -
Trre13g04154 363 ProSiteProfiles TPR repeat profile. 157 190 IPR019734 GO:0005515
Trre13g04154 363 Pfam Tetratricopeptide repeat 280 332 - -
Trre13g04154 363 MobiDBLite consensus disorder prediction 116 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04154 Trre-Chr13 49405025 49406116 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04154 - - gmx:102661172 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04154 13 49405025 49406116 Trre1g02683 1 22130609 22131667 PCT