Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04039 ATGGGTATCTTCACAACAAAACAAACACTCTCATTTCTCATTCTATTCAATCTTTCATCACTTGTTTTCACCACCGATAACACAAATGTTGTTTACAAAGGTTGTTCAGAGCAAAAACTACCACAACAATCTTCACCAAATCTGCAATCACTGTTATCTTCTCTTGTTTCAGCATCAGCTCAAAAAACTTTCGCCGCCACAACCACCGGCGACGGTCAAAACGCAGTCACCGGCGTTTACCAATGCAGAGGTGACCTTTCAACTTCTGATTGTTATCTTTGTGTCAGCAAGATTCCAAGCAAGTTAAGCAAACTCTGCGGCGAAGTTGCGGCGGCGAGAATTCAGCTCAGTGGGTGTTATTTAAGGTACGAGGTTGTTGGGTTTAAGCAAGTTCCTATGACTCAGTTGCTTTATAAGGTTTGTGGTTCAAAGAAAGTTAATGATGGTATTGGGTTTGAGGCTAAAAGGGATTATGGTTTTGGAATGGTGGAAAATGGTGTGAAGAATGGTGGGAATTTGTTCTATACAGGGAGTTATATGTCTTTGTATGTTTTGGGTCAATGTGAGGGTAGTTTGGGAAATGATGATTGTGGTGATTGTATTAAGATTGCTGAAGAACAAGCTAAATTGGAATGTGGTGATTCAATTTCTGCTCAGATTTATTTGTTTAGTTGCTTTATCAGTTATAGTTTTTACCCCAATGGAGTTTCTACCACATCTTCTTCCTCTTCAGGAGGGAATCCACACACAGAGAGGACAGTGGCTCTTGCAGTTGGAGGAGTTGCAGCACTTGGATTCTTCATTGTTTGTTTGATGTTTCTCAAATCAGTGCTTAAGAAAAAAGGTGGAAAGTATTGA 858 0.3998 MGIFTTKQTLSFLILFNLSSLVFTTDNTNVVYKGCSEQKLPQQSSPNLQSLLSSLVSASAQKTFAATTTGDGQNAVTGVYQCRGDLSTSDCYLCVSKIPSKLSKLCGEVAAARIQLSGCYLRYEVVGFKQVPMTQLLYKVCGSKKVNDGIGFEAKRDYGFGMVENGVKNGGNLFYTGSYMSLYVLGQCEGSLGNDDCGDCIKIAEEQAKLECGDSISAQIYLFSCFISYSFYPNGVSTTSSSSSGGNPHTERTVALAVGGVAALGFFIVCLMFLKSVLKKKGGKY 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04039 285 Pfam Salt stress response/antifungal 44 124 IPR002902 -
Trre13g04039 285 Pfam Salt stress response/antifungal 174 231 IPR002902 -
Trre13g04039 285 ProSiteProfiles Gnk2-homologous domain profile. 134 234 IPR002902 -
Trre13g04039 285 FunFam cysteine-rich repeat secretory protein 3 134 233 - -
Trre13g04039 285 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 11 277 - -
Trre13g04039 285 Gene3D - 133 233 IPR038408 -
Trre13g04039 285 Gene3D - 26 128 IPR038408 -
Trre13g04039 285 ProSiteProfiles Gnk2-homologous domain profile. 26 128 IPR002902 -
Trre13g04039 285 FunFam cysteine-rich repeat secretory protein 3 27 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04039 Trre-Chr13 48374609 48376231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04039 41 284 Receptor kinase-like Gene Family AT1G70530 27.757 3.14e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04039 - - gmx:100810212 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04039 13 48374609 48376231 Trre13g04039 13 48374609 48376231 ECH
Trre13g04039 13 48374609 48376231 Trre1g03811 1 37101781 37103387 PCT