Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03853 ATGGAACCAATCAATTGTCGGCGTCCTGAATTGGCTCCGAGCGGAGGCACTCCTCTGCCGGAGAGTCCTAGAGTTCCTATGGAGTTTCTGTCAAGGTCATGGAGTGCCTCAGCTCTTGAAGTTACAAAAGCACTTGCACCTCAACCACCTATTTCTTCATGCATGCCTTCCATTAATAGCCAATCTTCTTCAATTCCTGAAGAAACTAGTTACCATTCTATCTCTGATGAGCTCTCAACATTGTCTAAAAATCAATTCTCTTTTGCTTCCTCTGCTACTTCGCAGCTTGTCCTCGAACGCATTATGTCACATTCTGCTAGAGAGGAAGTGTCACCGTTAACGTCAGGTAGATTATCTCACAGCAGCGAGCCTATAAATGGCGCTGGTTCATTAACTGGAACAGACAGTCCACCGGTTTCTCATTCGGATGAATTTGACGACGTTGTTAAGTTTTTTCGAGCAAACAATTCCATTCACCCATTATTCAACGGTGGAAGAGCAAATGGTGCTATTGGAATTGGAAACGGTACCGCTTCTTCAGGACCTAAAACTGTTGGAAGGTGGTTGAAAGAAAGAAGAGAAAAGAAGAAAGAGGAAAGTAGAACACATAATGCTCAGCTGCACGCTACGATTACTGTGGCTGCTGTTGCTTCTGCTATAGCAGCCATTGCAGCCGCTACAGCTGCTTCATCAACACCAAACAAGGACGAGAAGATGGCTAAGACAGACATGGCTGTTGCTTCGGCTGCAACGTTAGTTGCAGCGCAATGTGTGGAGGCTGCTGAATCAATGGGAGCTGAGCGCGACCACCTTAATTCTGTGGTTAGCTCGGCTGTAAATGTCCGTTCACATGACGATATCACTACTCTTACTGCTGCAGCTGCCACAGCTCTTCGAGGAGCAGCAACTTTAAAAGCTCGAGCTCTAAAGGAAGTGTGGAATATTGCCGCAGTAACACCACTGGAGAAAGGAATGGGAGGTATAACAGTATGTGGAAAAGCTAATAACATAAACAACAGCACCGGTGACAGTGGCGAATTTGTGAATGGAGATAATTTTACCGGTTCCGGCATTCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAACGCACTCGCAACGGTGATTTGCATTGGAAAATAGTTTCTGTTTACATACATAGAACAGGAAAGGTAATGCTGAAAATGAAGAGCAAACTTGTTGCAGGAACTATTACTACCAAAAAGAACAAAAATGTTGTGCTAGACGTGTGCACGGATTTACCGGCATGGCCAGGGAGAGATTTATTAGACGATGGAGAAAAACGACGATACTTTGGATTGAAAACAGACTCGAGGGGAATCGTGGAGTTCGAGTGTAGAAATCAAAGAGAATATGATATATGGACACAAGGGGTCTCTAAGCTTCTCTCAATCGTTTCACAAAACAAATACAACAATTAA 1443 0.4421 MEPINCRRPELAPSGGTPLPESPRVPMEFLSRSWSASALEVTKALAPQPPISSCMPSINSQSSSIPEETSYHSISDELSTLSKNQFSFASSATSQLVLERIMSHSAREEVSPLTSGRLSHSSEPINGAGSLTGTDSPPVSHSDEFDDVVKFFRANNSIHPLFNGGRANGAIGIGNGTASSGPKTVGRWLKERREKKKEESRTHNAQLHATITVAAVASAIAAIAAATAASSTPNKDEKMAKTDMAVASAATLVAAQCVEAAESMGAERDHLNSVVSSAVNVRSHDDITTLTAAAATALRGAATLKARALKEVWNIAAVTPLEKGMGGITVCGKANNINNSTGDSGEFVNGDNFTGSGIQELLAKGSELLKRTRNGDLHWKIVSVYIHRTGKVMLKMKSKLVAGTITTKKNKNVVLDVCTDLPAWPGRDLLDDGEKRRYFGLKTDSRGIVEFECRNQREYDIWTQGVSKLLSIVSQNKYNN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03853 480 PANTHER EXPRESSED PROTEIN 16 474 IPR040269 -
Trre13g03853 480 MobiDBLite consensus disorder prediction 107 142 - -
Trre13g03853 480 Pfam Plant pleckstrin homology-like region 367 473 IPR013666 -
Trre13g03853 480 Pfam Auxin canalisation 20 324 IPR008546 -
Trre13g03853 480 MobiDBLite consensus disorder prediction 108 139 - -
Trre13g03853 480 MobiDBLite consensus disorder prediction 49 71 - -
Trre13g03853 480 MobiDBLite consensus disorder prediction 52 71 - -
Trre13g03853 480 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03853 Trre-Chr13 46714264 46716274 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03853 - - gmx:100805743 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03853 13 46714264 46716274 Trre13g03853 13 46714264 46716274 ECH
Trre13g03853 13 46714264 46716274 Trre1g02985 1 25521233 25525544 PCT