Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03849 ATGGCTGCTCTGTCACATAGTGATTCTAATAAGAAGTATTCATGGTGGTGGGACAGTCACAATAGCCCCAAGAACTCAAAATGGCTCCAAGAAAATCTCACAGATATGGATGTCAAGGTGAAGCAAATGATCAAGCTTATCGAGGAAGACGCGGATTCCTTTGCCAGAAGAGCAGAAATGTATTACAAGAAGCGTCCAGAGCTTATGAAATTGGTTGAAGAGTTTTACCGGGCATACCGAGCACTGGCTGAGAGATATGATCATGCAAATGGAGTGATACGACAGGCTCATCGTACCATGGCTGAGGCATTTCCTAATCAAGTCCCACCAGTACCAGCAGATGATTTACATGCCGTTCCATCAATGGAGAATGAGCAGCCGCATACGCCATATAGTACTCGCCATTCACATGCATTTTCTTACTCCGATGAATTGCAAAATGGTTTGAAACAGCTCAATGATCTCTTTATGACAGGAGAATCAGCAAGTCATGTAAAGTTTGTAGACGGGCGTGCTAGAAGAGGGCTCAATTTTCTTGACACCGAGGAGACTACAGGGCTAAACAATGTATGCCATGATACTGAGGATCGTATCTTATCTGATTCCGAGCGGATGACCAAAACCGAGACAGAAATTTTGGCATTGAAGATAGCCCTTGCTAGATTGGAAAGTGAAAAGGAAGATGGCTTGATTCAGTATCAGCAGAGTCTGGAGAGATTATCTAATCTGGAATCAGAAATGTCTAGTGCAAGAGAGAATTCTCAAGGACTTGATGACCGAGCGAGCAAAGCTGAAGCTGAAGTTCAAACCTTGAAGGAAACCCTTGCTGAATTGCACGCTGAAAGAGAACATAATATTCTTCAGTACCAGCAGTGCTTAGAGAAAATATGTAATCTGGAGGAAAATATTTCTTCTGCTCAAAAGGATATAGGAGAACTTAATGAACGAGCTACCGGAGCTGAAACTGAAGCCGAGTTCTTAAAGGCAGACCTTGCTAGCTTAGATGTTCAAAAGGAAGCTGTCCTTTTTCAGTACAACCAATCCTTGGAGACATTGTCAAAAGTAGAGGAGAAATTAGTACAAGCCGAGGAGAACGCAAAGAGAACTAGTGACCAAGCTAATATAGCAAAAAATGAAATCGAGGACATGAAGTTAAAAATTGCTAAACTTACCAAAGAGAATGAAGATGCGGCTCTTCGTTATCAACAATGCATGGAGATAATTTCTAGTTTGGAGCATAAACTCTCTTGTGCTGAAGAGGAGGTGCGTGAGCTAAATTGCAAGATAAATGATGGGGCTGAAAAGTTAAATATTTCTGAACGAAAGTGTCTTCTCTTGGAAACATCAAATGAGTCTCTACAATCTGAATTGCAGTCTTTGGTACAGAAGATGGGGACTCAAAGTGAAGAACTTAGCGAGAAGCAGAAGGAATTGGGTAGACTTTGGACTAGCATACAAGAGGAGAGGTTGCGATTCATTGAAGCCGAAACTGCTTTCCAAACTCTTCAGAATTTGCATGCTCAATCTCAGGAAGAACTTAGATCTCTTGCTGCCGAGCATCATAATAAGCTTGAAATTTTGGAGACAATGGAATCACATAAGCAGGCTTTAGAGGATGAAGTACACAAGGCCAAGGAGGAAAACAAAATTCTAAATGATCTCAAACTGTCTTCATCTGTCTCTATAAATAATTTGCAGAGTGAGATGTTAAACCTGAGGGAAACAATAAAGAAACTTGAACTGGAGGTTGGACTGCGAGTAGATGAAAGAAATGCTCTTCAGCAGGAAATTTACTGTCTTAAAGCGGAGCTTACTGATGTGAACAAAAGACACGAATCCACAATGGAGGAGGTCAGATCAACGGGCTTAGATCCACAATGCTTTAGCTTATCTGTGAAGACATTGCAAGATGAAAACTCAAAGCTGAAGGAAACATGCGAGGCTGACAAAGGTGAGAACACGACTCTCAAGAAAAAACTGGAGATCATGGAGAAACTTCTAGAGAAAAATGCTGCTTTGGAGAATTCACTTTCAGTTTTGAATGCTGAGCTGGAGAGTGTCAGAGGAAGGGTAATGGTGTTGGAAGAAACTTGTGAATCGTTGCTTGAGGAGAAATCAACTCTTGCTGCTGAGAAGGCAACTTTGTTTTTTGAGTTGCAAACCACAGCTGAAAAGTTGGAGAAGCTCTCAGAAAAAAACATCCATTTAGAAAATTCACTATTTGATGTGAATGCCGAGCTTGAAGGATTAAGGGTAAAGTCAAACGCTTTAGAAGAGACTTGCCTTTTGCTTGACCATGAAAAGTCTAGTCTCACCTCTGAGAAAGAAACGTTAGATTCACAATTGAACATTACTCATCAAACACTGAAAAATCTTGAGAAACAACATAGTGAATTGGAACTGCAACATTGGGAACTAAAAGCAGAAAGGGAGTCTGCACTTCAAAAAGTGGAAGATCTGCTGGTCTCATTATACGCCGAGAGGGAAGAGCGTTCCAGAACCGTGCAATTGAATGAAGGTCACTTGGTTGAGAAGGAATTTCAAATTCATATTCTACAAGAAGATGCAAGTTACCAGAAAAAGGAATATGAAGAGGAACTGGACAGAGCTGTACATGCCCAAATGCAAATTTTCATCTTGCAGAAATGTATTCGGGATTTGGAGCAAAATAACTTCTCCCTTCTAGTTGAGAGTCGGAGACTCTTGGAGGCATCCAAAACATCTGGTAGATTGATGTCGAAATTGGAGAATGACAATGTTCAAAAGCAAGTTGATGCAAATTTGTTGTCTGAGAAAATTAACATACTAAGGATTGGTCTGCTTCAGGTGTTAAAAACTCTTGACATTAACCGCAAGCATTTGTCTGAAGATAATGTTGAAGAAAACCAGGAGCTTCTGAACCAGATACCTGACAAACTTCAAGAAACGCAGAATTCTTTTGTCACAGTTTCTCATGAAAACCAGCAAGCAGCGATTGAGAATTCAGTTCTTGTTTCATTCCTAGACCAGTTGAAATTAAAGGCTGAAAATCTTGTAACAGAAAGAGAAGAACTTGAAGGGGAGTTTAGGACAATGTCTAAGCAATACTTGGCACTGCAAGAAGAGGTCCAGATGATGGCAGAGAAGAATCAAGAATTGAAGTTGACAATCAGCAAGGGAGAAGAGAAAATGGAAGAAATGACAACTGAAAAATTGACGGCACTGAAAGTGCTAAGCAAAGAAATGGATAAACTTGTTTCAGTAAATGTCAACCTTGAAGAGACATTGAAAATAGTGATGGGAAAATTAGAAGATGTGCAGATGGAAAACTCATATCTTAAGGAGTCATTTGTAGTGTCTAACACTGAACTAAAATTAGTTGAATCTGTCAATGATCAATTAAATAGTCAGATTAGGAATGGAAAGGAATTGTTGTCTCAAAAGGAAAGTGAGATTTTGGAAGCAGCAGAGATGTATAGTGCTTTACAGGATGAGAAAAAAGCATTGCAAAAATTGGTGGAAGATCTGAATAGTAAGTATGAAGAGGCGAGGGTGATACTTGAACACCAAGCTAGTCAAATTTTAGAATTATCATCAATCAATGATCATCAAAATGAAGAGCTTGAATGCCTTCATGAAGTGAATAAGAACTTGAAGGCAGAAATGAGGCACCTGCATCAAGAACTTGGAGAAACTAAACTGAGGGAGAAAAAGTTAAGTTATGCATTACTCAAGGGAGCGGATGAGCTTGAACAATGGGAATCTCAGGCTGCCACATTCTATACCGCAATGCAGATTTCTACTGTCAATGAGACATTCTTTGAAGGAAAGGTCCGTGAGCTAGCTGATGCATGTGAGAATCTTGAATATATAAAAAGCTCCAATGTTATGGAAAGTGAAAAGCTGGAAGAAAGAGTTAACAAGTTGGAAGCTGAAAACAGAAGATTACAGACTCAGATGGCTTCTTATGTACCAGCCGTCAGTGTTTTGAATGATTGTATTACATCCTTGGAGATGCAGACGCTTGTTCACGCAAAACCTCATAGTCACGACTACAAAGAATCAAAGATTAAAAATTTGGCAAATGTAAAATACGCTGAAGGTGATCCACGAAAAAGTGAAGATCAAAATGCTACAGAAACAGATGCATTTCCAGACTTCCAAGACATGCAGAAAAGGGTTAATGCTATTGAAATGGCTGTTAAACAGATGAATGAAAGTTTCAAACCTAAGGATGAAATGAGAGAGATTCAAGTATTGAAATCTGGAATCAGCTGGCGCCAAGGAAACTCTCAAGCAAGCAAGCATTATACTCAAATGGATGAAGCAAAGGAGCATCAATTTGGAGCTGTTTATGGACATAGGACAGGAAAATCATTGCAAGATGTTCCTGTTGCAGAAATTGAAGTTCTGCCGAAGGACATCGTGCTTGATCATACATATGGGAGAAGTAGGAGTAGGAGAGAAGCTCGTGGATCCGATGATCAGATGCTTGAATTGTGGGAAACTGCTGACAAAGATGGCGTTATTGGCGTGAGACTTGGCAAGGCACAGAAAGACACTGCACCTACTGGGTATCACCAAAGGAGACTAAGCAAGGATTCCAAAAATAAATATCCTTCGGTAGAGTCCTTGATCGAAAAGGAAATGAGTGTGGACAAATTAGAGATCTCAAGAAGACAGTCGCAAGACTCACAACCGCTGCTGATTGAGGGCAATAAGAGAAAGGTTTTAGAAAGACTTGATTCAGATGCTCAAAAGTTGATGAACCTGGAAATCACCGTACAAGATTTGATAAACAAGATGGAAATTATTGAGAAGAACACAATGGGAAAAGGTATCGAGTATGATGCTGTGAAAGGACAGCTTGAATCTGCTCAGGAGGCCATCACAAAGTTGTTTGATGCAAACCGCAAGTTGATGACGAATGTAGAAGAGGGCACGCCATCCTTTACTGGGAAGTCTGTAACAGTGTCAGATGAGAGTGGAAGTGTTAGCAGAAGGAAAATTTCAGAACAGGCTCGGAGAGGATCTGAAAAAATAGGACGGCTGCAGTTGGAGGTCCAAAGGCTGCAATTTTTACTCCTAAAATTGAATGATGACAAAGACGGAAAAGGAAAAGGAAAAGCAATGATTGATGATGAAAATCCAAGAGTCCTTTTGCGTGATTATCTCTATGGTGAGACAAAGAAAAGCTACCACAAGAGGAAGAAGAAAACATCCTTTTGTGCATGCGTGCAGCCACCCACCAAGGGAGATTGA 5241 0.4022 MAALSHSDSNKKYSWWWDSHNSPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHANGVIRQAHRTMAEAFPNQVPPVPADDLHAVPSMENEQPHTPYSTRHSHAFSYSDELQNGLKQLNDLFMTGESASHVKFVDGRARRGLNFLDTEETTGLNNVCHDTEDRILSDSERMTKTETEILALKIALARLESEKEDGLIQYQQSLERLSNLESEMSSARENSQGLDDRASKAEAEVQTLKETLAELHAEREHNILQYQQCLEKICNLEENISSAQKDIGELNERATGAETEAEFLKADLASLDVQKEAVLFQYNQSLETLSKVEEKLVQAEENAKRTSDQANIAKNEIEDMKLKIAKLTKENEDAALRYQQCMEIISSLEHKLSCAEEEVRELNCKINDGAEKLNISERKCLLLETSNESLQSELQSLVQKMGTQSEELSEKQKELGRLWTSIQEERLRFIEAETAFQTLQNLHAQSQEELRSLAAEHHNKLEILETMESHKQALEDEVHKAKEENKILNDLKLSSSVSINNLQSEMLNLRETIKKLELEVGLRVDERNALQQEIYCLKAELTDVNKRHESTMEEVRSTGLDPQCFSLSVKTLQDENSKLKETCEADKGENTTLKKKLEIMEKLLEKNAALENSLSVLNAELESVRGRVMVLEETCESLLEEKSTLAAEKATLFFELQTTAEKLEKLSEKNIHLENSLFDVNAELEGLRVKSNALEETCLLLDHEKSSLTSEKETLDSQLNITHQTLKNLEKQHSELELQHWELKAERESALQKVEDLLVSLYAEREERSRTVQLNEGHLVEKEFQIHILQEDASYQKKEYEEELDRAVHAQMQIFILQKCIRDLEQNNFSLLVESRRLLEASKTSGRLMSKLENDNVQKQVDANLLSEKINILRIGLLQVLKTLDINRKHLSEDNVEENQELLNQIPDKLQETQNSFVTVSHENQQAAIENSVLVSFLDQLKLKAENLVTEREELEGEFRTMSKQYLALQEEVQMMAEKNQELKLTISKGEEKMEEMTTEKLTALKVLSKEMDKLVSVNVNLEETLKIVMGKLEDVQMENSYLKESFVVSNTELKLVESVNDQLNSQIRNGKELLSQKESEILEAAEMYSALQDEKKALQKLVEDLNSKYEEARVILEHQASQILELSSINDHQNEELECLHEVNKNLKAEMRHLHQELGETKLREKKLSYALLKGADELEQWESQAATFYTAMQISTVNETFFEGKVRELADACENLEYIKSSNVMESEKLEERVNKLEAENRRLQTQMASYVPAVSVLNDCITSLEMQTLVHAKPHSHDYKESKIKNLANVKYAEGDPRKSEDQNATETDAFPDFQDMQKRVNAIEMAVKQMNESFKPKDEMREIQVLKSGISWRQGNSQASKHYTQMDEAKEHQFGAVYGHRTGKSLQDVPVAEIEVLPKDIVLDHTYGRSRSRREARGSDDQMLELWETADKDGVIGVRLGKAQKDTAPTGYHQRRLSKDSKNKYPSVESLIEKEMSVDKLEISRRQSQDSQPLLIEGNKRKVLERLDSDAQKLMNLEITVQDLINKMEIIEKNTMGKGIEYDAVKGQLESAQEAITKLFDANRKLMTNVEEGTPSFTGKSVTVSDESGSVSRRKISEQARRGSEKIGRLQLEVQRLQFLLLKLNDDKDGKGKGKAMIDDENPRVLLRDYLYGETKKSYHKRKKKTSFCACVQPPTKGD 1746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03849 1746 Coils Coil 1581 1601 - -
Trre13g03849 1746 Coils Coil 345 435 - -
Trre13g03849 1746 Coils Coil 775 809 - -
Trre13g03849 1746 Coils Coil 233 281 - -
Trre13g03849 1746 Coils Coil 590 610 - -
Trre13g03849 1746 Coils Coil 303 330 - -
Trre13g03849 1746 PANTHER PROTEIN NETWORKED 4A 260 361 - -
Trre13g03849 1746 Coils Coil 656 711 - -
Trre13g03849 1746 Coils Coil 1068 1102 - -
Trre13g03849 1746 Coils Coil 205 225 - -
Trre13g03849 1746 Coils Coil 632 652 - -
Trre13g03849 1746 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Trre13g03849 1746 SUPERFAMILY Tropomyosin 354 620 - -
Trre13g03849 1746 Coils Coil 527 554 - -
Trre13g03849 1746 Coils Coil 1380 1400 - -
Trre13g03849 1746 Coils Coil 499 519 - -
Trre13g03849 1746 Coils Coil 1194 1228 - -
Trre13g03849 1746 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Trre13g03849 1746 Coils Coil 450 477 - -
Trre13g03849 1746 Coils Coil 1124 1179 - -
Trre13g03849 1746 Coils Coil 719 746 - -
Trre13g03849 1746 Gene3D - 203 374 - -
Trre13g03849 1746 MobiDBLite consensus disorder prediction 1641 1657 - -
Trre13g03849 1746 MobiDBLite consensus disorder prediction 1641 1667 - -
Trre13g03849 1746 Coils Coil 1285 1312 - -
Trre13g03849 1746 MobiDBLite consensus disorder prediction 1519 1533 - -
Trre13g03849 1746 Coils Coil 562 582 - -
Trre13g03849 1746 MobiDBLite consensus disorder prediction 1512 1533 - -
Trre13g03849 1746 Coils Coil 1001 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03849 Trre-Chr13 46643429 46649600 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03849 - - tpra:123889469 3050.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03849 13 46643429 46649600 Trre13g03849 13 46643429 46649600 ECH
Trre13g03849 13 46643429 46649600 Trre1g02991 1 25614357 25620529 PCT