Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03822 ATGGCACAAAGAAACATTGAGATGCTACTAAGCATGTTCTTTGTTGTAGTGACTCTTTGGGGTGTCACAGTGGCACAAATTGACTCAAGTTGTGCCAATGTGCTCATAAGTCTTTCTCCATGCCTTGACTACATCACAGGACAGACATCAACCCCTTCCTCTGGTTGTTGCTCACAACTTGCCTCGGTGATGGGGTCACAGCCGCAGTGTCTATGTGAGGTTGTTAATGGCGGTGCTTCGTCTATTGCTGCTAGTCTCAACATCAATCAAACTCGTGCTTTAGCACTTCCCACTGCTTGCAATGTTCAAACACCTCTTATCAACACTTGCAGTGGCTCGGCTTCTTCTTCTACTCCTCCGGCAGGTGTTTCGAGTTCCAACATTCCAAATTCTCCTTCAGGGATTTTTTCATCAACTACAGCCGGTGGTGGAACTAACCGTGGCTCATCCTCATCTTATGCAACATCAAGTTCCGCAAAATTACAATGTTCTTTGCTTGTTCTGGTTATCTTTGCAAAGCTAACATTCACTTTCATGAACACGACTTAG 549 0.4499 MAQRNIEMLLSMFFVVVTLWGVTVAQIDSSCANVLISLSPCLDYITGQTSTPSSGCCSQLASVMGSQPQCLCEVVNGGASSIAASLNINQTRALALPTACNVQTPLINTCSGSASSSTPPAGVSSSNIPNSPSGIFSSTTAGGGTNRGSSSSYATSSSAKLQCSLLVLVIFAKLTFTFMNTT 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03822 182 CDD AAI_LTSS 38 102 - -
Trre13g03822 182 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 12 149 IPR043325 -
Trre13g03822 182 Pfam Probable lipid transfer 23 110 IPR016140 -
Trre13g03822 182 Gene3D - 28 121 IPR036312 -
Trre13g03822 182 PRINTS Plant phospholipid transfer protein signature 87 104 IPR000528 GO:0006869|GO:0008289
Trre13g03822 182 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Trre13g03822 182 PRINTS Plant phospholipid transfer protein signature 51 65 IPR000528 GO:0006869|GO:0008289
Trre13g03822 182 SMART aai_6 31 110 IPR016140 -
Trre13g03822 182 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 30 111 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03822 Trre-Chr13 46378923 46380075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03822 10 174 Acyl Lipid Metabolism Gene Families AT2G48130 40.237 4.72e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03822 - - cam:101512493 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03822 13 46378923 46380075 Trre13g03822 13 46378923 46380075 ECH
Trre1g03004 1 25803817 25805021 Trre13g03822 13 46378923 46380075 PCT