Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03737 ATGGCGGCTATCCAAGAATCACGGACGGATCAACCAAAAACAACACCGCCGCCGTTTCAACCACCGCCGCCGTTTCTCGTCTCTGATTCTTACGCTAAGGACGCTATTCTTGCATGGTTTCACGGCGAGTTTGCCGCTGCTAACGCAATCATCGACGCTCTCTGCGGTCATCTTGCGCAGGTTGCTTCATCGTCGAACGATTATGATTTGGCTTTTGCTGCTATCCATCGGCGGCGTCTCAACTGGATCCCTATCATCCAGATGCAGAAGTATCACTCCATTGCTGATGTCACTCTTGAACTGCGTAAGGTCGCTGAGAAGAAAACTGAATCGATCGAAGGAGTGAAGGAAACAGTAGAGAGTAATGGTTTTGATGAGAAAGTGGTGGAAAGCGTCGGAAATGGTGGCGATCAAGCCACGGCGGAGGTGACAGAGGAATATGATTCGCCGAACAGTGAGATCACTGATTCAGGATCGCGGGAATTTCAATACAGTTTCATTAACAATAGCATATGTTCAAATCACGAAGAATGTGAAGGACGTTCTTCACAGATAAAGTTGACAAAAGGTTTCGTAACAAAGGAGTTTCTGAAAGGGCATCCGGTGAATGCTGTGAAAGGGTTGAGGTTGTATGAAGACATTTTTTCTGAATCACAACTCTGCAAGCTGAATGATTTTGTGAAAGAGATCCATGCTGCTGGCCAGAATGGGGAACTTTCAGGTGAAACCTTCATACTATTTAACAAACAGGTGAAGGGGAACAAGAGAGAGCTGATTCAGTTAGGTGCTCCCATATTTGGACAGATAAAAGACAATGCCAAAAGCAATATTGAGCCAATTCCATCACTTCTACAGGGTGTCATTGATCACCTTATTCAGTGGGATTTGATTCCAGAGTACAAAAGGCCAAATGGTTGCATCATCAACTACTTTGAAGAGGGGGAGTTTTCTCAGCCATTCATGAAACCACCGCATTTGGATCAACCTCTGTCTACCCTTCTTCTCTCTGAATCTACAATGGCTTTTGGGCGTATTCTTATGAGTGAAGATGATGGGAATTACAAAGGCCCACTCATGCTCTCTTTGAAGCAAGGGTCTCTTTTAGTGATGAGAGGAAACAGCGCTGACATGGCAAGGCATGTGATGTGTCCATCCCCTAACAGAAGGGTGAGCATCACCTTCTTTAGAGGTAGAGAAGACTCCTATCAAGGCCAATCAACAAATCCTCCAACGATGGCATCTGCGATGACTGTTTGGCAACCTGACACTGCCAGTCCATTTGCTTTGCCAAATGGAGCAGTAAGTGGCTATGAGGCTATGGATATGATGCCCCCATGGGGAATTCTTGGTGCTCCGGTGGTCATGCTAACCCCTATGCACCCTATGGCAATGAATCCCGGCAAACTTCCTTGTGGAGGGACCGGAGTTTTCTTTCCTTGTTGGAAGGGGCAACCCAGAAAACAACCAAGGTATCTTCCACCGCGTGCTCACAAAGGACGAGTTATGGCATTACCTTCCCCTGTTAAGTCATAG 1533 0.4644 MAAIQESRTDQPKTTPPPFQPPPPFLVSDSYAKDAILAWFHGEFAAANAIIDALCGHLAQVASSSNDYDLAFAAIHRRRLNWIPIIQMQKYHSIADVTLELRKVAEKKTESIEGVKETVESNGFDEKVVESVGNGGDQATAEVTEEYDSPNSEITDSGSREFQYSFINNSICSNHEECEGRSSQIKLTKGFVTKEFLKGHPVNAVKGLRLYEDIFSESQLCKLNDFVKEIHAAGQNGELSGETFILFNKQVKGNKRELIQLGAPIFGQIKDNAKSNIEPIPSLLQGVIDHLIQWDLIPEYKRPNGCIINYFEEGEFSQPFMKPPHLDQPLSTLLLSESTMAFGRILMSEDDGNYKGPLMLSLKQGSLLVMRGNSADMARHVMCPSPNRRVSITFFRGREDSYQGQSTNPPTMASAMTVWQPDTASPFALPNGAVSGYEAMDMMPPWGILGAPVVMLTPMHPMAMNPGKLPCGGTGVFFPCWKGQPRKQPRYLPPRAHKGRVMALPSPVKS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03737 510 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 302 398 IPR005123 -
Trre13g03737 510 MobiDBLite consensus disorder prediction 490 510 - -
Trre13g03737 510 Pfam 2OG-Fe(II) oxygenase superfamily 306 396 IPR044861 -
Trre13g03737 510 Gene3D - 192 403 IPR037151 -
Trre13g03737 510 SUPERFAMILY Clavaminate synthase-like 200 394 - -
Trre13g03737 510 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 32 148 IPR044842 GO:0003729|GO:0006402|GO:0032451
Trre13g03737 510 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03737 Trre-Chr13 45277305 45282445 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03737 K10767 - gmx:100776159 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03737 13 45277305 45282445 Trre13g03737 13 45277305 45282445 ECH
Trre13g03737 13 45277305 45282445 Trre1g04658 1 52663099 52666529 PCT