Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01933 ATGGCTTCTTCGGAAGCCGATTCCCGTCTCAGCCGTGTCATCGTCCCCGCGCTCGAGAAAATCCTTAAGAACGCTTCGTGGAGAAAGCATGCTAAGCTCGCTCATGAGTGTAAATCCGTCGTTGAAACCCTCACTTCACCGCAGAAGCTTCAATCGCCGACTTCTGAAGCCGGTGCTTCCGACGCCGGTGAGCCTGAGGTTTCAGTACCTGGACCGCTTCATGATGGAGGCTCCGTTGAGTATTCTTTGGCAGAGTCCGAATCGATCTTATCTCCTCTCATCAACGCTGCTGGCTCCGGCGTATTGAAGATCGCCGATCCCGCTGTTGATGCTATCCAGAAACTCATTGCCCTTGGATACCTCCGTGGTGAGGCGGATGCATCTGGAGAATGTCCTGAATCGAAGTTTCTAGCGAGCTTGATTGACTCGGTGTGCAAGTGTCATGACCTAGGTGACGATGCCATGGAACTTTTGGTGCTGAAGACACTCTTGTCTGCGGTAACTTCAATTTCGCTTAGAATTCACGGTGATTGTTTGCTTTTAATTGTGAGGACTTGTTATGATATCTATCTCGGTAGTAAGAATGTTGTGAATCAAACTACGGCTAAGGCGTCTTTGATTCAGATGTTGGTGATTGTGTTTAGAAGAATGGAGGCAGATTCGTCTACTGTTCCGATTCAGCCTATTGTCGTGGCTGAATTGATGGATCCAACGGAAAAATCTGATGTTGATAGCTCCATGACAGTGTTTGTGCAGGGTTTTATAACCAAAATAATGCAGGATATAGATGGGGTTTGGAACCCCTCAGGGACGCCGAGTAAGGTTGCGGCCATGGCTCATGATGGTGCGTTTCAGACCACTGTGACGGTGGAGACCACAAACCCCGCAGATTTGTTAGATTCAACTGACAAGGACATGTTGGATGCCAAGTATTGGGAGATCAGTATGTATAAGACAGCTTTGGAGGGGAGGAAAGGGGAGCTGGTGGATGGAGAGGTGGTGGAGGAGAGGGATGATGATTTGGAGATTCAGATTGGGAATAAGCTGAGGAGAGATGCTTTTTTGGTGTTCAGGGCACTTTGTAAATTGTCGATGAAGACACCCCCTAAGGAGGCATCTGCTGATCCACAGTTGATGAAGGGGAAGATTGTGGCTCTGGAGTTGTTGAAAATTTTGTTGGAGAATGCTGGAGCTGTCTTCAGAACTAGTGAAAGGTTTTTGGGTGCCATCAAGCAGTACTTATGCCTATCATTGTTGAAGAACAGTGCTTCAACTCTTATGATCGTATTTCAGCTATCATGCTCCATCTTCATCAGTCTGGTATCAAGATTTAGAGCTGGCCTGAAAGCAGAAATTGGAGTATTTTACCCCATGATTGTTCTCAGGGTTCTAGAAAATGTTGCTCAACCTAATTTTCAGCAAAAGATGATAGTGCTTCGTTTTCTTGAGAAACTTTGTCTTGATTCACAGATATTGGTGGACATTTTTATAAACTATGACTGTGATGTCAATTCATCAAACATATTTGAGAGGATGGTCAACGGACTTCTGAAAACTGCCCAAGGTGTCCCTCCTGGTGTAACAACCACAGTTTTGCCGCCTCAAGAGGCAACTCTAAAACTTGAAGCCATGAAATGCTTGGTTGCTGTTTTAAAATCAATGGGAGACTGGATGAACAAACAAATGCGCATTCCCGATCCCCTTTCAGGCAAAAAAATTGAAGCAGTTGATAATGGCCATGAAGCTGGAGATTTTCCCCTGGCAAATGGGAATGGAGAAGACCCAGTTGAAGGATCAGATACGCATTCTGAACTCTCCAATGAGGCGTCTGATGTTTCTACTATTGAGCAACGCCGGGCTTATAAACTAGAACTTCAGGAAGGTATATCACTTTTTAATAGGAAGCCAAAGAAAGGAATTGAGTTTCTCATCAATGCCAACAAAGTGGGTAACTCACCGGAGGAGATAGCTGCTTTTCTTAAAGACGCATCTGGGTTGAACAAAACTTTGATTGGTGATTATCTTGGAGAAAGGGAAGAATTATCCTTGAAAGTAATGCATGCCTATGTGGATTCTTTTGACTTTCAAGGGATGGAGTTTGATGAGGCAATCAGGATGTTTCTTCAAGGCTTTAGACTGCCTGGTGAAGCACAGAAGATTGATCGAATCATGGAAAAGTTTGCTGAACGTTATTGCAAATGTAATCAAAAAGTCTTTTCTAGTGCCGATACAGCATATGTCCTTGCATATTCTGTGATATTGTTGAATACTGATGCTCACAATCCTATGGTGAAGAATAAGATGTCTGCTGATGATTTCATAAAAAACAACCGTGGCATAGATGATGGAAAAGATCTACCAGAGGAATATTTGAGGTCATTGTTTGAGAGAATATCTAGAAATGAGATCAAAATGAAAGATGTTGATCTGGAACACCAACAAATACAGGCAGTGAATCCTAACAAACTATTAGGCTTGGATAGCATATTGAATATTGTGATCCGTAAGCGTGGGGAAGACAGTCATATGGGGACCAGTGATGATCTAATCCGCCGTATGCAAGAAGAATTCAGAGAAAAAGCTCGCAAAACAGAGTCTGTCTATTATGCAGCAACCGATGTAGTAATCCTTAGATTCATGATTGAGGTCTGTTGGGCACCGATGTTAGCTGCTTTTAGTGTTGCTCTTGATCAAAGTGATGATGAAATTGTAACAGCTCTGTGTCTTGAAGGCTTCCGCTATGCTATTCATGTTACATCTGTAATGTCAATGAAGACACATCGAGATGCTTTTGTGACTTCATTAGCAAAGTTTACTTCCTTGCATTCTCCTGCTGATATTAAGCAAAAAAATGTAGACGCAATCAAGGCGATAGTTACTATTGCTGATGAGGATGGGAATTACTTACAAGAAGCATGGGAGCATATTTTGACCTGTGTTTCCCGATTTGAGCATTTACATCTTCTTGGAGAGGGGGCTCCACCAGATGCCACATTCTTTGCTTTTCCTCAGAATGATTCTGAAAAAGTAAAGCAAACTAAATCAGCTATTCTTCCGGTTTTGAAGAAGAAAGGACCTGGGAGGATGCAATATGCAGCTGCCACGTTGATGCGAGGTTCATATGATAGTGCTGGAATTGGCAGTAATGGTGCTGGGGCTATCACATCAGAACAAGTGAACAGTCTAGTTTCTAATTTGAATATGTTGGAACAAGTTGGAAGCTCAGAAATGAGTCGCATATTCACGAGGAGTCAAAAGTTAAATAGTGAAGCCATACTAGACTTCGTTAAGGCTTTATGCAAGGTTTCCATGGAGGAACTGAGATCTCCATCTGATCCACGGGTTTTCAGTCTTACCAAGATTGTGGAGATTGCGCACTATAATATGAACCGTATCCGGCTTGTGTGGTCAAGCATCTGGCATGTTCTTTCAGATTTCTTTGTTACCATTGGTTGTTCAGGAAATCTTTCGATTGCAATTTTTGCCATGGATTCCTTGCGTCAGTTGTCAATGAAATTTCTTGAGCGGGAAGAGTTGGCTAACTATAATTTCCAAAATGAATTTATGAAGCCTTTCGTGATTGTTATGAGAAAGAGTAGTGCTGTTGAAATTAGAGAACTTATTATCAGATGTGTCTCTCAAATGGTTTTATCTCGTGTCAACAATGTCAAATCAGGATGGAAGAGCATGTTCATGGTATTTACAACAGCAGCATATGATGACCACAAAAACATTGTACTCTTGGCTTTTGAAATTATTGAGAAGATTATACGAGATTATTTTCCATACATCACTGAGACTGAAACCACCACCTTTACAGATTGTGTCAATTGTCTAATTGCATTCACCAATAGTAGATTTAACAAAGAGATTAGCCTAAATGCTATCACTTTTCTTCGATTTTGTGCAACAAAATTAGCTGAAGGAGACCTTGGCTCTTCTTCGAGGAATAAAGGCAAGGAAACTTTTGGAAAAATTTCCACACCTTCACCTCGAACTGGAAAAGAGGGGAGACAAGATAATGGAGAGATGACAGACAAAGATGATCATCTCTATTTCTGGTTTCCTTTATTGGCTGGTTTGTCTGAGCTTAGCTTTGACCCGAGGCCAGAGATAAGGCAGAGTGCTTTGCAAATCCTATTTGAAACCTTACGCAACCATGGCCACCTCTTTTCACTGCCTTTATGGGAAAGAGTATTTGAATCAGTCCTATTCCCAATTTTTGATTATGTTCGCCATGCTATTGATCCTTCAGGGAGTAGCTCCCAGGTCAGTGAAGTGGAGACCGATGGTGAGCTTGATCAAGATGCCTGGCTCTATGAAACATGCACATTAGCTCTCCAATTGGTGGTAGATCTTTTTATCAACTTCTACAACACTGTTAACCCACTTTTAAAAAAGGTGCTGATGCTCCTTGTAAGCTTTATAAAGCGCCCTCATCAAAGCCTGGCTGGAATTGGTATTGCGGCGTTTGTTCGTTTGATGAGTAATGCTGGGGAGCTGTTTTCTGATGAGAAGTGGTTTGAAGTGGTTTTGTTTCTAAAGGATGCAGCAAATGCAACACTCCCTAACTTTTCGTTCCTTGATGGTGGAGACTTTGTGACTGGAAATGAACAACATGCTTCAAAAGCTGAAGATGACAGAGATCCTGCTGAGTCTAGCTCACATGAAAATTTAGAAAGCCCGAGGACGGACCGTCTTTATGCTTATTTATCGGATGCAAAATGTCGAGCAGCTGTTCAGCTTCTATTGATTCAGGCGGTGACGGAGGTCTATAACATATACCGCACTCAACTTTCAGCAAAGGCCATGCTAGTCCTCTTTGATGCTTTGCATAATGTGGCATCACACGCTCACAAGATTAACAGCAACACTATTTTACGCTCCAAGTTACAAGAGTTTGGGTCTATGACCCAAATGCAAGACCCTCCACTGTTACGCCTTGAGAATGAATCCTACCAAATATGCATCACATTTTTACAGAACCTTGTGGTTGACAAACCACCTAGCTATGAGGAGGCCGAAGTTGAGACAAATCTAGTTCGGCTGTGTCAGGAGGTCTTAGGGTTTTATATTGAAGTAGCAGGCTCTGGACAAGTATCTGAATCTTCTCATGGTAGGCCGCAACATTGGTTAATTCCTCTAGGCTCTGGGAAGCGAAGAGAGTTAGCTGCACGCGCACCACTTATTGTGACCACTCTTCAGACTATTAGTAGTTTGGGAGATATTTCTTTTGAGAAGAATCTGGTGCATTTTTTCCCTCTTCTATCAAGCTTGATAAGTTGTGAACATGGATCAACTGAGGTCCAGGTAGCTCTCAGTGATATGCTTAGTTTATCAGTTGGTCCTCTTTTGCTACGGTCATGTTGA 5370 0.4244 MASSEADSRLSRVIVPALEKILKNASWRKHAKLAHECKSVVETLTSPQKLQSPTSEAGASDAGEPEVSVPGPLHDGGSVEYSLAESESILSPLINAAGSGVLKIADPAVDAIQKLIALGYLRGEADASGECPESKFLASLIDSVCKCHDLGDDAMELLVLKTLLSAVTSISLRIHGDCLLLIVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMDPTEKSDVDSSMTVFVQGFITKIMQDIDGVWNPSGTPSKVAAMAHDGAFQTTVTVETTNPADLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGEVVEERDDDLEIQIGNKLRRDAFLVFRALCKLSMKTPPKEASADPQLMKGKIVALELLKILLENAGAVFRTSERFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFISLVSRFRAGLKAEIGVFYPMIVLRVLENVAQPNFQQKMIVLRFLEKLCLDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVTTTVLPPQEATLKLEAMKCLVAVLKSMGDWMNKQMRIPDPLSGKKIEAVDNGHEAGDFPLANGNGEDPVEGSDTHSELSNEASDVSTIEQRRAYKLELQEGISLFNRKPKKGIEFLINANKVGNSPEEIAAFLKDASGLNKTLIGDYLGEREELSLKVMHAYVDSFDFQGMEFDEAIRMFLQGFRLPGEAQKIDRIMEKFAERYCKCNQKVFSSADTAYVLAYSVILLNTDAHNPMVKNKMSADDFIKNNRGIDDGKDLPEEYLRSLFERISRNEIKMKDVDLEHQQIQAVNPNKLLGLDSILNIVIRKRGEDSHMGTSDDLIRRMQEEFREKARKTESVYYAATDVVILRFMIEVCWAPMLAAFSVALDQSDDEIVTALCLEGFRYAIHVTSVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNVDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQNDSEKVKQTKSAILPVLKKKGPGRMQYAAATLMRGSYDSAGIGSNGAGAITSEQVNSLVSNLNMLEQVGSSEMSRIFTRSQKLNSEAILDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSGNLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSSAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKEISLNAITFLRFCATKLAEGDLGSSSRNKGKETFGKISTPSPRTGKEGRQDNGEMTDKDDHLYFWFPLLAGLSELSFDPRPEIRQSALQILFETLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGSSSQVSEVETDGELDQDAWLYETCTLALQLVVDLFINFYNTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGELFSDEKWFEVVLFLKDAANATLPNFSFLDGGDFVTGNEQHASKAEDDRDPAESSSHENLESPRTDRLYAYLSDAKCRAAVQLLLIQAVTEVYNIYRTQLSAKAMLVLFDALHNVASHAHKINSNTILRSKLQEFGSMTQMQDPPLLRLENESYQICITFLQNLVVDKPPSYEEAEVETNLVRLCQEVLGFYIEVAGSGQVSESSHGRPQHWLIPLGSGKRRELAARAPLIVTTLQTISSLGDISFEKNLVHFFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC 1789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01933 1789 MobiDBLite consensus disorder prediction 580 611 - -
Trre13g01933 1789 Pfam BIG2 C-terminal domain 1580 1778 IPR046455 -
Trre13g01933 1789 MobiDBLite consensus disorder prediction 1316 1335 - -
Trre13g01933 1789 CDD Sec7 621 803 IPR000904 GO:0005085|GO:0032012
Trre13g01933 1789 MobiDBLite consensus disorder prediction 1311 1342 - -
Trre13g01933 1789 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 350 508 IPR032691 -
Trre13g01933 1789 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 71 1654 - -
Trre13g01933 1789 MobiDBLite consensus disorder prediction 44 74 - -
Trre13g01933 1789 Gene3D - 602 694 - -
Trre13g01933 1789 FunFam Brefeldin A-inhibited guanine nucleotide-exchange 1 696 814 - -
Trre13g01933 1789 MobiDBLite consensus disorder prediction 1539 1561 - -
Trre13g01933 1789 Pfam Domain of unknown function (DUF1981) 1172 1254 IPR015403 -
Trre13g01933 1789 Pfam C-terminal region of Mon2 protein 1353 1428 IPR032817 -
Trre13g01933 1789 MobiDBLite consensus disorder prediction 1538 1561 - -
Trre13g01933 1789 FunFam Brefeldin A-inhibited guanine nucleotide-exchange protein 1 605 694 - -
Trre13g01933 1789 SUPERFAMILY ARM repeat 385 1512 IPR016024 -
Trre13g01933 1789 Gene3D - 695 811 IPR023394 -
Trre13g01933 1789 ProSiteProfiles SEC7 domain profile. 614 801 IPR000904 GO:0005085|GO:0032012
Trre13g01933 1789 Pfam Sec7 domain 622 803 IPR000904 GO:0005085|GO:0032012
Trre13g01933 1789 SUPERFAMILY Sec7 domain 618 809 IPR035999 GO:0005085|GO:0032012
Trre13g01933 1789 MobiDBLite consensus disorder prediction 44 58 - -
Trre13g01933 1789 SMART sec7_5 618 803 IPR000904 GO:0005085|GO:0032012
Trre13g01933 1789 Pfam Dimerisation and cyclophilin-binding domain of Mon2 6 220 IPR032629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01933 Trre-Chr13 16496446 16506529 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01933 K18442 - gmx:100789988 3118.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01933 13 16496446 16506529 Trre13g01933 13 16496446 16506529 ECH
Trre13g01933 13 16496446 16506529 Trre15g01362 15 10598583 10609468 PCT