Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01621 ATGTCCACCAAAGATCAAACAACAGCCCTAATCTCATGGCAAAAAATCCCCAACATCAAATGCGACGTCGTTTCTCTCAATTCCCATTCTCCTCTCCGTCAAAACGTCACACTCACCTTCGCCACCGCAACCACCCCCGACACCAAATTCGCCTGTGTTTCTGTCGCAGAAGCCAAAATTCATAACCATTTCGCTCCAACTCCTTCTCAGCTTCTCAAACACCCGCTCGCCGCCTTGGCTTTTGTTCCTAGAGATGCCGCTCTCTTCTCCGCCGGTGCCTTCGCTGGCGCCGCCGCTAAGACTTTCACCGCACCGCTCGACCGTATCAAACTCCTCATGCAGACTCATGGTGTGCGGGTCGGGCAAGACAGTGCTAAGAAGGCAATAGGTTTCGTTGAGGCCATAGCTGTTATAGGGAAGAAAGAAGGGATTAGAGGTTACTGGAAGGGAAACCTCCCGCAGGTGATTCGGGTTATACCTTATAGTGCCGTCCAGCTTTTTGCTTACGAATTTTATAAGAAATTATTCAAGGGACAGGATGGTGAACTCTCTGTTGTGGCAAGACTTTCCGCAGGTGCTTTTGCTGGCATGACATCCACTTTTATAACTTACCCATTAGATGTTCTGAGATTACGATTAGCCGTTGAACCTGGTTGTCGAACCATGTCAGAGGTTGCCTTGTGTATGCTAAGGGAGGAAGGTTTTGCATCTTTCTACAGAGGCCTTGGGCCTTCTCTTATTGCAATTGCTCCTTATATTGCGGTGAATTTTTGTGTTTTTGACTTATTAAAGAAGTCTTTGCCTGAGAAGTATCAAAAGAGAACTGAAACATCTATACTCACTGCTGTTCTTTCGGCATCTCTAGCCACACTTACATGCTATCCTCTAGACACTGTCCGACGACAAATGCAATTGAGGGGTACACCTTATACGACAGTATTAGAAGCTTTTGCAGGTATTGTGGCACGAGATGGAGTTGCTGGTTTGTATCGGGGATTTGTACCCAATGCTCTAAAAACCCTACCAAACAGCAGCATCAAGCTTACCTCCTATGACATTGTTAAGCGCATAATTGCAGCTAGTGAGAAAGAATTTCAAACAATTACAGAAGAAAATCGCAACAAACAAAAAAACATCAACAAACAATGA 1149 0.4552 MSTKDQTTALISWQKIPNIKCDVVSLNSHSPLRQNVTLTFATATTPDTKFACVSVAEAKIHNHFAPTPSQLLKHPLAALAFVPRDAALFSAGAFAGAAAKTFTAPLDRIKLLMQTHGVRVGQDSAKKAIGFVEAIAVIGKKEGIRGYWKGNLPQVIRVIPYSAVQLFAYEFYKKLFKGQDGELSVVARLSAGAFAGMTSTFITYPLDVLRLRLAVEPGCRTMSEVALCMLREEGFASFYRGLGPSLIAIAPYIAVNFCVFDLLKKSLPEKYQKRTETSILTAVLSASLATLTCYPLDTVRRQMQLRGTPYTTVLEAFAGIVARDGVAGLYRGFVPNALKTLPNSSIKLTSYDIVKRIIAASEKEFQTITEENRNKQKNINKQ 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01621 382 Pfam Mitochondrial carrier protein 89 178 IPR018108 -
Trre13g01621 382 Pfam Mitochondrial carrier protein 278 359 IPR018108 -
Trre13g01621 382 Pfam Mitochondrial carrier protein 182 269 IPR018108 -
Trre13g01621 382 PANTHER SOLUTE CARRIER FAMILY 25 75 358 - -
Trre13g01621 382 ProSiteProfiles Solute carrier (Solcar) repeat profile. 83 175 IPR018108 -
Trre13g01621 382 FunFam Envelope ADP,ATP carrier protein 85 363 - -
Trre13g01621 382 Gene3D Mitochondrial carrier domain 86 367 IPR023395 -
Trre13g01621 382 PRINTS Mitochondrial carrier protein signature 198 216 IPR002067 GO:0055085
Trre13g01621 382 PRINTS Mitochondrial carrier protein signature 150 170 IPR002067 GO:0055085
Trre13g01621 382 PRINTS Mitochondrial carrier protein signature 101 115 IPR002067 GO:0055085
Trre13g01621 382 PRINTS Mitochondrial carrier protein signature 282 304 IPR002067 GO:0055085
Trre13g01621 382 PRINTS Mitochondrial carrier protein signature 88 101 IPR002067 GO:0055085
Trre13g01621 382 PRINTS Mitochondrial carrier protein signature 239 257 IPR002067 GO:0055085
Trre13g01621 382 ProSiteProfiles Solute carrier (Solcar) repeat profile. 183 266 IPR018108 -
Trre13g01621 382 Coils Coil 358 378 - -
Trre13g01621 382 SUPERFAMILY Mitochondrial carrier 87 353 IPR023395 -
Trre13g01621 382 ProSiteProfiles Solute carrier (Solcar) repeat profile. 273 357 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01621 Trre-Chr13 13264964 13269570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01621 5 377 Organic Solute Cotransporters AT3G51870 65.608 5.19e-180 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01621 K14684 - gmx:100778912 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01621 13 13264964 13269570 Trre13g01621 13 13264964 13269570 ECH
Trre7g00458 7 2869165 2871436 Trre13g01621 13 13264964 13269570 PCT