Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00689 ATGAAAGGAAAGAGTCGGAGAAGTGGCGGTACGGTTCAATTGGATTACTTGATTCACATACAGGAGCTTAAGCCGTGGCCACCGTCACAATCTCTCAAATCCATTCGATCTGTATTGATACAATGGGAGAACGGAGAACGCTCTTCTGGGTCAACTAAACCTGTTTCCCCTTCAATTGGTGAAGGAAAAATGGAGTTTAATGAGTCATTTAGGCTTTCTGTGACATTGGTTAAGGACATGTCCGTTAAAAGCTCCGACGCTGAAGTTTTCCAAAAGAATACTTTGGAGTTCAACTTGTATGAGCCTAGAAGAGATAAGATTGTTAAGGGTCAGTTGCTTGGGACGGCCATCGTAGACTTAGCGGAATGTGGTATACTTAGAGACACTTTAAGCATTAGTGTTCCATTGAATTGCAAGAGGAACTACAGAAACACGGATCAGCCACTTTTATTCGTTAAAATTGAGCCTGTTGAAAAGAATCGCAGTAAGCCAACATTGAAGGACAGTTTGTTGAAGGAAAATTGCAGCAGCGGTGATTCTGTATCGGCGTTGATGAACGGTGAATATGCCGAGGAAGCTGAAAATACATCTGTCACTGATGATGATGTTTCCTCTCATTCATCTGTGGCTGCAGTTATAAATTCACCCGAATCTAGTGTGTGCATACCTCCTGATCGTGAAGAGAATGGAACAGCTCAAAAAAATGGTAGAAAGGACAAGGAACACCACTTGGTTTCAGAAACAAGTGTTGAAAAATTGAATATGATGCAACAGGATATGCACGTGAGACCCGAGAGGAGTTCAATAAATGGTCATAATTCTATGGAAAATATTCCGAGTCATGGTTTAGAGACAACCCAAAAGCAAGTTGTTTCTCCTAGTGCCGATTATTCTTCCATCTCCTTGGAGGAAAAGTCTATGAGCAGCTCCAGAAGCAGTGATCAGGAAACTTTAGATCAGGAGATTCATGAAAAAGCTGCTAATGATATAAACGTAATAAGAAATGTTCAAACCAACAATAATGAAGGTTATCTAGATAGTAATGGCTTCATGAACAAGAATCCAGGCTCAGTAAACTGTGATGGTTTGGAAATCAAGGACAAATTAAACGAGCGATGTGACGAATCCGACAAATATTGTGTGAAGGAAGGAGGAAGCGATGAATATTACTATAGTTCCGTTGAGGACAGGCTTGGAAAAAGTGAAAGATCAAAGTACATAAAATCTGTAAGATCATCAGGAGACTTGGCTAGGAGTATTGGATCACTTGGTAGCAATTATCATGCTGAGGTAAAGGAAAACGGAATTAATGGAGATGCTCAAAACAATGGAGGGATCATCAGAAGCAGTGAAAGAAAAGACAGTAAGATTTATCCAAAGGACGCCAGAAATAGCATTTCAGGCAGCAAGATTGAGCAGTTGGAAAACAAGATAAAGATGCTTGAAGGAGAATTAAGAGAAGCGGCTTCAATTGAGGCTGCTTTATATTCCGTAGCGGCTGAGCATGGAAGCTCCATGAGTAAGGTTCATGCCCCAGCTCGACGACTTTCCAGGCTGTACCTTCATGCTTGTAAAGAAAATATTCCTGCAAGAAGGTCTGGTGCAGCTAAAAGTGCTGTTTCAGGATTAGTACTTGTTGCAAAGGCATGTGGAAATGATGTACCAAGGTTGACGTTTTGGTTGTCAAATGCGATTGTTTTGAGAACAATTATAAGTCAAACAAGAAAGGATGTGGCACCATCAAATCCTTCCGGAACTGGTGCAAGAAGGAAGAGTGGAGAAGGGAATGGAAAGATAGTACAACCATTAATATGGAAGGGGTTCTCTCCTAAGAAAACCGAAAATATTGAAGTGGAATATGGAGGTTTTGTTAACTGGGATGACTCAAACGTGTTCACTTCGGCATTGGAAAAGGTTGAAACTTGGATCTTCTCTCGCATTGTTGAATCTATATGGTGGCAGTCTCTGACTCCACATATGCAGCTTGTTGATGCAAAGATTACTCATAAGGATATTGGTTCTGCCTCAAGTAAAAGCTTTACGAAGACATTGAGCTCATCAAGCTCACATGATCAAGAGATGGGAAATTTATCACTAGATATTTGGAAGAAGGCTTTTAGAGAAGCTTGTGAAAGAATCTGTCCAGTCCGAGCTGGGGGGCATGAGTGTGGCTGTCTGTCTGTGCTGCCTAGATTGATAATGGAGCAGTGCATAGCCAGATTAGATGTTGCTATGTTCAATGCCATTCTTCGCGAATCTGTTGATGACATTCCATCTGATCCTATATCTGATCCAATTAGTGATCCCAAGGTTCTCCCCATTCCACCTGGTAAATCAAGCTTTGGAGCCGGTGCTCAGCTCAAAACTGCGGTTGGTAACTGGTCTAGATGGCTGACTGACCTATTTGGTATGGATGACGACGACTCGCTTAAGGATAAAGATAATGATGACATTGATAACAATGATGGAAATGCATCTTTCAAGGCCTTCCACCTTCTTAATGCACTAAGTGATCTCTTGATGCTTCCTAAGGATATGCTGTTAAGTGCATCCATTAGGAAAGAGGTCTGCCCAATGTTTGGTGCATCAATAATCAAGACGATTGTAGAAAATTTTGTTCCGGATGAGTTTTGCCCTGATCCAATTCCCACTGATGTGTTTGAAGCTCTGGATTCACAGGATGATGTCGAGGATGAAGAGGAGTCTGTCAACAACTTTCCATGCATTGCTTCTCCCATTGTATATTCACCTCCACAAGCAACAACGATTGCGAAAATTATTGGGGAGATTGGAAGTGAATCTCAGCATAGTCAGCTGAGAAGAAGCAGATCATCTGTTGTTAGGAAGTCGCACACCAGTGATGATGAGCTCGATGAATTAAACTCCCCCTTATCTTCAATTTTATTTAGCAATTCATCCCGGCCAGTATCAACAAAACCCAACTTGAAGTGGAAAGAAAGCCGCAATGAGTCTTCTACCAGATATGCACTTCTTAGGAATGTTTGGATGAACAGCGAGTGA 3021 0.4151 MKGKSRRSGGTVQLDYLIHIQELKPWPPSQSLKSIRSVLIQWENGERSSGSTKPVSPSIGEGKMEFNESFRLSVTLVKDMSVKSSDAEVFQKNTLEFNLYEPRRDKIVKGQLLGTAIVDLAECGILRDTLSISVPLNCKRNYRNTDQPLLFVKIEPVEKNRSKPTLKDSLLKENCSSGDSVSALMNGEYAEEAENTSVTDDDVSSHSSVAAVINSPESSVCIPPDREENGTAQKNGRKDKEHHLVSETSVEKLNMMQQDMHVRPERSSINGHNSMENIPSHGLETTQKQVVSPSADYSSISLEEKSMSSSRSSDQETLDQEIHEKAANDINVIRNVQTNNNEGYLDSNGFMNKNPGSVNCDGLEIKDKLNERCDESDKYCVKEGGSDEYYYSSVEDRLGKSERSKYIKSVRSSGDLARSIGSLGSNYHAEVKENGINGDAQNNGGIIRSSERKDSKIYPKDARNSISGSKIEQLENKIKMLEGELREAASIEAALYSVAAEHGSSMSKVHAPARRLSRLYLHACKENIPARRSGAAKSAVSGLVLVAKACGNDVPRLTFWLSNAIVLRTIISQTRKDVAPSNPSGTGARRKSGEGNGKIVQPLIWKGFSPKKTENIEVEYGGFVNWDDSNVFTSALEKVETWIFSRIVESIWWQSLTPHMQLVDAKITHKDIGSASSKSFTKTLSSSSSHDQEMGNLSLDIWKKAFREACERICPVRAGGHECGCLSVLPRLIMEQCIARLDVAMFNAILRESVDDIPSDPISDPISDPKVLPIPPGKSSFGAGAQLKTAVGNWSRWLTDLFGMDDDDSLKDKDNDDIDNNDGNASFKAFHLLNALSDLLMLPKDMLLSASIRKEVCPMFGASIIKTIVENFVPDEFCPDPIPTDVFEALDSQDDVEDEEESVNNFPCIASPIVYSPPQATTIAKIIGEIGSESQHSQLRRSRSSVVRKSHTSDDELDELNSPLSSILFSNSSRPVSTKPNLKWKESRNESSTRYALLRNVWMNSE 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00689 1006 MobiDBLite consensus disorder prediction 266 319 - -
Trre13g00689 1006 MobiDBLite consensus disorder prediction 934 959 - -
Trre13g00689 1006 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 14 123 IPR019448 -
Trre13g00689 1006 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 3 315 IPR021827 GO:0005643
Trre13g00689 1006 Coils Coil 464 491 - -
Trre13g00689 1006 ProSiteProfiles C2 NT-type domain profile. 4 158 IPR019448 -
Trre13g00689 1006 MobiDBLite consensus disorder prediction 216 241 - -
Trre13g00689 1006 MobiDBLite consensus disorder prediction 266 315 - -
Trre13g00689 1006 MobiDBLite consensus disorder prediction 577 596 - -
Trre13g00689 1006 MobiDBLite consensus disorder prediction 434 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00689 Trre-Chr13 5323296 5328137 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00689 - - cam:101491530 1407.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00689 13 5323296 5328137 Trre13g00689 13 5323296 5328137 ECH
Trre13g00689 13 5323296 5328137 Trre3g03750 3 48408331 48414723 PCT