Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04887 ATGAATCGCCTCCTCGGCTTCCTCTTCCATCAAGGTGTCTTGGATGAGCAATTTTTGCAACTTCAACAGCTTCAAGATCACACTTCCCCTAACTTCGTATCCGAAGTCGTCAACATTTATTTCCACGAGTCCGAAAAACTACTCACCAATCTCAGATCATTACTAATGGAGAGGGAGTTTTCTGACTATAAGAAAATTGAAATACATTTGAATCAATTCATTGGTAGCAGTTCAAGCATTGGTGCTAAGAGAGTCACAAGCGTTTGTATTGCTTTTCGTGCAGCTTCTGAACAAGACAACCGTGCTGGATGTTTGCGAGCGTTGGAGATGTTGGAGCATGAATATTGCCATCTTAAGAACAAATTGCATGAACTCTTCCAAATAGAGCAGCAACGTGCTTTGGCAGCAGGAGTGAGATACCCTATGCAGCATCAATAA 438 0.4201 MNRLLGFLFHQGVLDEQFLQLQQLQDHTSPNFVSEVVNIYFHESEKLLTNLRSLLMEREFSDYKKIEIHLNQFIGSSSSIGAKRVTSVCIAFRAASEQDNRAGCLRALEMLEHEYCHLKNKLHELFQIEQQRALAAGVRYPMQHQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04887 145 FunFam Histidine-containing phosphotransfer protein 1 1 141 - -
Trre11g04887 145 Gene3D HPT domain 1 144 IPR036641 GO:0000160
Trre11g04887 145 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 1 131 IPR045871 GO:0000160|GO:0009927|GO:0043424
Trre11g04887 145 Pfam Hpt domain 35 105 IPR008207 GO:0000160
Trre11g04887 145 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 29 125 IPR008207 GO:0000160
Trre11g04887 145 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 8 131 IPR036641 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04887 Trre-Chr11 59782285 59783324 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04887 K14490 - gmx:100777831 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04887 11 59782285 59783324 Trre11g04887 11 59782285 59783324 ECH
Trre11g04887 11 59782285 59783324 Trre7g00202 7 1399643 1402887 PCT